Partly automated merge of codes-net

Build system and documentation files were largely hand-merged.

.gitignore

@@ -2,7 +2,7 @@
 /Makefile.in
 /aclocal.m4
 /autom4te.cache/
-/codes_base_config.h.in
+/codes_config.h.in
 /compile
 /config.guess
 /config.sub
@@ -16,8 +16,9 @@
 /config.status
 /Makefile
 /stamp-h1
-/codes_base_config.h
-/maint/codes-base.pc
+/codes_config.h
+/maint/codes.pc
+/test-driver
 .deps
 
 # make generated artifacts

Makefile.am

@@ -13,35 +13,37 @@ EXTRA_PROGRAMS =
 CLEANFILES = $(bin_SCRIPTS)
 EXTRA_DIST =
 BUILT_SOURCES =
-src_models_CESOURCES =
 
 # pkgconfig files
 pkgconfigdir = $(libdir)/pkgconfig
-pkgconfig_DATA = maint/codes-base.pc
+pkgconfig_DATA = maint/codes.pc
 $(pkgconfig_DATA): config.status
 
-EXTRA_DIST += prepare.sh COPYRIGHT configure.ac reformat.sh uc-codes.cfg
+EXTRA_DIST += \
+  prepare.sh COPYRIGHT TODO.txt configure.ac uc-codes.cfg reformat.sh \
+  misc/README misc/ptrn_loggp-2.4.6.patch \
+  doc/BUILD_STEPS doc/GETTING_STARTED doc/RELEASE_NOTES
 
 AM_CPPFLAGS = -I$(top_srcdir)/src ${ROSS_CFLAGS}
 
 AM_CFLAGS =
 
-AM_LDFLAGS = ${ROSS_LDFLAGS}
-
 AM_CXXFLAGS = $(AM_CFLAGS)
 
+LDADD = $(lib_LIBRARIES) $(ROSS_LIBS)
+
 include Make.rules
 
 include $(top_srcdir)/scripts/Makefile.subdir
 include $(top_srcdir)/src/Makefile.subdir
+include $(top_srcdir)/src/models/Makefile.subdir
 include $(top_srcdir)/tests/Makefile.subdir
 include $(top_srcdir)/doc/Makefile.subdir
 
 if USE_DARSHAN
 AM_CPPFLAGS += ${DARSHAN_CFLAGS} -DUSE_DARSHAN=1
 src_libcodes_base_a_SOURCES += src/workload/methods/codes-darshan-io-wrkld.c
-tests_workload_codes_workload_test_LDADD += ${DARSHAN_LIBS}
-tests_workload_codes_workload_mpi_replay_LDADD += ${DARSHAN_LIBS}
+LDADD += ${DARSHAN_LIBS}
 TESTS += tests/workload/darshan-dump.sh
 endif
 
@@ -53,6 +55,5 @@ endif
 if USE_DUMPI
 AM_CPPFLAGS += ${DUMPI_CFLAGS} -DUSE_DUMPI=1
 src_libcodes_base_a_SOURCES += src/workload/methods/codes-dumpi-trace-nw-wrkld.c 
-tests_workload_codes_workload_test_LDADD += ${DUMPI_LIBS}
-tests_workload_codes_workload_mpi_replay_LDADD += ${DUMPI_LIBS}
+LDADD += ${DUMPI_LIBS}
 endif

TODO.txt

+1- Torus network model:
+
+- Check how to specify the buffer size in the config file (buffer size is in flits)--- Option 1 specify the buffer size in packets and convert it into flits?
+- Check how to specify the number of torus nodes from the config file? Currently they are being calculated from the file... How to integrate this with the mapping thing?
+Option: Specify the torus network and the length of each torus dimension.
+
+2- Tests
+
+- clean up modelnet-test.c and code based on it. The way it calculates lpids is
+  extremely fragile (a bunch of constants + some assumptions that lead to very
+  confusing code)

codes/model-net-inspect.h

+/*
+ * Copyright (C) 2013 University of Chicago.
+ * See COPYRIGHT notice in top-level directory.
+ *
+ */
+
+/* This header provides ways for modelnet users to look at the state of the
+ * underlying implementations (e.g., torus) */
+
+#ifndef MODEL_NET_INSPECT_H
+#define MODEL_NET_INSPECT_H
+
+/* ALL FUNCTIONS
+ * anno is the annotation specified in the configuration (NULL -> no
+ * annotation), while ignore_annotations is a flag controlling whether
+ * annotations are checked for or not - if not, then */
+
+/** TORUS FUNCTIONS **/
+
+/* get the dimensions of a torus configuration torus network. n and dims are
+ * return paramters */
+void model_net_torus_get_dims(
+        char const        * anno,
+        int                 ignore_annotations,
+        int               * n,
+        int const * const * dims);
+
+/* mapping utilities to and from linearized torus node ids */
+void model_net_torus_get_dim_id(
+        int         flat_id,
+        int         ndims,
+        const int * dim_lens,
+        int       * out_dim_ids);
+
+int model_net_torus_get_flat_id(
+        int         ndims,
+        const int * dim_lens,
+        const int * dim_ids);
+
+#endif /* end of include guard: MODEL_NET_INSPECT_H */
+
+/*
+ * Local variables:
+ *  c-indent-level: 4
+ *  c-basic-offset: 4
+ *  indent-tabs-mode: nil
+ * End:
+ *
+ * vim: ft=c ts=8 sts=4 sw=4 expandtab
+ */

codes/model-net-lp.h

+/*
+ * Copyright (C) 2014 University of Chicago.
+ * See COPYRIGHT notice in top-level directory.
+ *
+ */
+
+/* This is the base model-net LP that all events pass through before
+ * performing any topology-specific work. Packet scheduling, dealing with
+ * packet loss (potentially), etc. happens here. 
+ * Additionally includes wrapper event "send" function that all 
+ * events for underlying models must go through */
+
+#ifndef MODEL_NET_LP_H  
+#define MODEL_NET_LP_H
+
+#include <ross.h>
+#include "codes/lp-msg.h"
+#include "model-net.h"
+#include "model-net-sched.h"
+#include "net/dragonfly.h"
+#include "net/loggp.h"
+#include "net/simplenet-upd.h"
+#include "net/simplep2p.h"
+#include "net/torus.h"
+
+extern int model_net_base_magic;
+
+// register the networks with ROSS, given the array of flags, one for each
+// network type
+void model_net_base_register(int *do_config_nets);
+// configure the base LP type, setting up general parameters
+void model_net_base_configure();
+
+/// The remaining functions/data structures are only of interest to model-net
+/// model developers
+
+// Construct a model-net-specific event, analagous to a tw_event_new and
+// codes_event_new. The difference here is that we return pointers to 
+// both the message data (to be cast into the appropriate type) and the
+// pointer to the end of the event struct.
+// 
+// This function is expected to be called within each specific model-net
+// method - strange and disturbing things will happen otherwise
+tw_event * model_net_method_event_new(
+        tw_lpid dest_gid,
+        tw_stime offset_ts,
+        tw_lp *sender,
+        int net_id,
+        void **msg_data,
+        void **extra_data);
+
+// Construct a model-net-specific event, similar to model_net_method_event_new.
+// The primary differences are:
+// - the event gets sent to final_dest_lp and put on it's receiver queue
+// - no message initialization is needed - that's the job of the
+//   model_net_method_recv_msg_event functions
+//
+// NOTE: this is largely a constructor of a model_net_request
+void model_net_method_send_msg_recv_event(
+        tw_lpid final_dest_lp,
+        tw_lpid dest_mn_lp, // which model-net lp is going to handle message
+        tw_lpid src_lp, // the "actual" source (as opposed to the model net lp)
+        uint64_t msg_size, // the size of this message
+        int is_pull,
+        uint64_t pull_size, // the size of the message to pull if is_pull==1
+        int remote_event_size,
+        const mn_sched_params *sched_params,
+        const char * category,
+        int net_id,
+        void * msg,
+        tw_stime offset,
+        tw_lp *sender);
+// just need to reverse an RNG for the time being
+void model_net_method_send_msg_recv_event_rc(tw_lp *sender);
+
+// Issue an event from the underlying model (e.g., simplenet, loggp) to tell the
+// scheduler when next to issue a packet event. As different models update their
+// notion of "idleness" separately, this is necessary. DANGER: Failure to call
+// this function appropriately will cause the scheduler to hang or cause other
+// weird behavior.
+//
+// This function is expected to be called within each specific model-net
+// method - strange and disturbing things will happen otherwise
+void model_net_method_idle_event(tw_stime offset_ts, int is_recv_queue,
+        tw_lp * lp);
+
+// Get a ptr to past the message struct area, where the self/remote events
+// are located, given the type of network.
+// NOTE: this should ONLY be called on model-net implementations, nowhere else
+void * model_net_method_get_edata(int net_id, void * msg);
+
+/// The following functions/data structures should not need to be used by
+/// model developers - they are just provided so other internal components can
+/// use them
+
+enum model_net_base_event_type {
+    MN_BASE_NEW_MSG,
+    // schedule next packet
+    MN_BASE_SCHED_NEXT,
+    // message goes directly down to topology-specific event handler
+    MN_BASE_PASS
+};
+
+typedef struct model_net_base_msg {
+    // no need for event type - in wrap message
+    model_net_request req;
+    int is_from_remote;
+    // parameters to pass to new messages (via model_net_set_msg_params)
+    // TODO: make this a union for multiple types of parameters
+    mn_sched_params sched_params;
+    model_net_sched_rc rc; // rc for scheduling events
+} model_net_base_msg;
+
+typedef struct model_net_wrap_msg {
+    msg_header h;
+    union {
+        model_net_base_msg m_base;  // base lp
+        terminal_message   m_dfly;  // dragonfly
+        loggp_message      m_loggp; // loggp
+        sn_message         m_snet;  // simplenet
+        sp_message         m_sp2p;  // simplep2p
+        nodes_message      m_torus; // torus
+        // add new ones here
+    } msg;
+} model_net_wrap_msg;
+
+#endif /* end of include guard: MODEL_NET_LP_H */
+
+/*
+ * Local variables:
+ *  c-indent-level: 4
+ *  c-basic-offset: 4
+ * End:
+ *
+ * vim: ft=c ts=8 sts=4 sw=4 expandtab
+ */

codes/model-net-method.h

+/*
+ * Copyright (C) 2013 University of Chicago.
+ * See COPYRIGHT notice in top-level directory.
+ *
+ */
+
+#ifndef MODELNET_METHOD_H
+#define MODELNET_METHOD_H
+
+#include <ross.h>
+
+// forward decl of model_net_method since we currently have a circular include
+// (method needs sched def, sched needs method def)
+struct model_net_method;
+
+#include "codes/model-net-sched.h"
+
+// interface that each model-net model implements
+
+struct model_net_method
+{
+    uint64_t packet_size; /* packet size */
+    void (*mn_configure)(); /* For initializing the network */
+    /* Register lp types with ROSS. This may be left as NULL, in which case the
+     * type corresponding to name "modelnet_<type>" will be registered
+     * automatically. Most networks don't need this (currently, only dragonfly
+     * uses it) */
+    void (*mn_register)(tw_lptype *base_type);
+    tw_stime (*model_net_method_packet_event)(
+            model_net_request const * req,
+            uint64_t message_offset, // offset in the context of the whole message
+            uint64_t packet_size, // needed in case message < packet
+            tw_stime offset,
+            mn_sched_params const * sched_params,
+            void const * remote_event,
+            void const * self_event,
+            tw_lp *sender,
+            int is_last_pckt);
+    void (*model_net_method_packet_event_rc)(tw_lp *sender);
+    tw_stime (*model_net_method_recv_msg_event)(
+            const char * category,
+            tw_lpid final_dest_lp,
+            tw_lpid src_mn_lp, // the modelnet LP this message came from
+            uint64_t msg_size,
+            int is_pull,
+            uint64_t pull_size,
+            tw_stime offset,
+            int remote_event_size,
+            const void* remote_event,
+            tw_lpid src_lp, // original caller of model_net_(pull_)event
+            tw_lp *sender); // lp message is being called from (base LP)
+    void (*model_net_method_recv_msg_event_rc)(tw_lp *lp);
+    const tw_lptype* (*mn_get_lp_type)();
+    int (*mn_get_msg_sz)();
+    void (*mn_report_stats)();
+    void (*mn_collective_call)(char const * category, int message_size, int remote_event_size, const void* remote_event, tw_lp* sender);
+    void (*mn_collective_call_rc)(int message_size, tw_lp* sender);    
+};
+
+extern struct model_net_method * method_array[];
+
+#endif /* MODELNET_METHOD_H */
+
+/*
+ * Local variables:
+ *  c-indent-level: 4
+ *  c-basic-offset: 4
+ * End:
+ *
+ * vim: ft=c ts=8 sts=4 sw=4 expandtab
+ */

codes/model-net-sched.h

+/*
+ * Copyright (C) 2014 University of Chicago.
+ * See COPYRIGHT notice in top-level directory.
+ *
+ */
+
+/* A scheduler interface for use by model-net models. */
+
+#ifndef MODEL_NET_SCHED_H
+#define MODEL_NET_SCHED_H
+
+#include <ross.h>
+#include "model-net.h"
+
+// forward decl of mn_sched_params since we currently have a circular include
+// (method needs sched def, sched needs method def)
+typedef struct mn_sched_params_s mn_sched_params;
+
+#include "model-net-method.h"
+
+/// types of schedulers
+/// format: enum type, config string, function pointer names
+/// fcfs-full eschews packetization
+#define SCHEDULER_TYPES \
+    X(MN_SCHED_FCFS,      "fcfs",        &fcfs_tab) \
+    X(MN_SCHED_FCFS_FULL, "fcfs-full",   &fcfs_tab) \
+    X(MN_SCHED_RR,        "round-robin", &rr_tab) \
+    X(MN_SCHED_PRIO,      "priority",    &prio_tab) \
+    X(MAX_SCHEDS,         NULL,          NULL)
+
+#define X(a,b,c) a,
+enum sched_type {
+    SCHEDULER_TYPES
+};
+#undef X
+
+/// scheduler decls
+
+typedef struct model_net_sched_s model_net_sched;
+typedef struct model_net_sched_rc_s model_net_sched_rc;
+
+// priority scheduler configurtion parameters
+typedef struct mn_prio_params_s {
+    int num_prios; // number of priorities
+    // sub-scheduler to use. can be any but prio
+    enum sched_type sub_stype;
+} mn_prio_params;
+
+// TODO: other scheduler config params
+
+// initialization parameter set
+typedef struct model_net_sched_cfg_params_s {
+    enum sched_type type;
+    union {
+        mn_prio_params prio;
+    } u;
+} model_net_sched_cfg_params;
+
+typedef struct mn_sched_cfg_params {
+    mn_prio_params prio;
+} mn_sched_cfg_params;
+
+/// message-specific parameters
+enum sched_msg_param_type {
+    MN_SCHED_PARAM_PRIO, // currently, only the priority scheduler has params
+    MAX_SCHED_MSG_PARAM_TYPES
+};
+
+// scheduler-specific parameter definitions must go here
+struct mn_sched_params_s {
+    int prio; // MN_SCHED_PARAM_PRIO (currently the only one)
+} ;
+
+/// interface to be implemented by schedulers
+/// see corresponding general functions
+typedef struct model_net_sched_interface {
+    // initialize the scheduler
+    // params - scheduler specific params (currently only prio q uses)
+    void (*init)(
+            const struct model_net_method     * method, 
+            const model_net_sched_cfg_params  * params,
+            int                                 is_recv_queue,
+            void                             ** sched);
+    // finalize the scheduler
+    void (*destroy)(void * sched);
+    // add a new request to the scheduler
+    // sched_params - per-message parameters distinct to each scheduler:
+    //                prio (currently the only user): int priority
+    //              - NULL arguments should be treated as "use default value" 
+    void (*add)(
+            const model_net_request * req,
+            const mn_sched_params   * sched_params,
+            int                       remote_event_size,
+            void                    * remote_event,
+            int                       local_event_size,
+            void                    * local_event,
+            void                    * sched,
+            model_net_sched_rc      * rc,
+            tw_lp                   * lp);
+    // reverse the previous request addition
+    void (*add_rc)(void *sched, const model_net_sched_rc *rc, tw_lp *lp);
+    // schedule the next packet for processing by the model
+    int  (*next)(
+            tw_stime              * poffset,
+            void                  * sched,
+            // NOTE: copy here when deleting remote/local events for rc
+            void                  * rc_event_save,
+            model_net_sched_rc    * rc,
+            tw_lp                 * lp);
+    // reverse schedule the previous packet
+    void (*next_rc)(
+            void                     * sched,
+            const void               * rc_event_save,
+            const model_net_sched_rc * rc,
+            tw_lp                    * lp);
+} model_net_sched_interface;
+
+/// overall scheduler struct - type puns the actual data structure
+
+struct model_net_sched_s {
+    enum sched_type type;
+    // data for the underlying scheduler implementation (see
+    // model-net-sched-impl*)
+    void * dat;
+    const model_net_sched_interface * impl;
+};
+
+/// scheduler-specific structures go here
+
+/// reverse computation structure - this is expected to be held by upper-level
+/// model-net LPs and passed to the scheduler functions to allow proper rc
+/// NOTE: since modelnet LPs will be stashing this in their event structs, 
+/// need to provide full definition in header
+struct model_net_sched_rc_s {
+    // NOTE: sched implementations may need different types, but for now they
+    // are equivalent 
+    model_net_request req; // request gets deleted...
+    mn_sched_params sched_params; // along with msg params
+    int rtn; // return code from a sched_next 
+    int prio; // prio when doing priority queue events
+};
+
+// initialize the scheduler
+// - params is created by the configuration routine and can be different from
+//   type to type. Currently only priority scheduler uses it
+void model_net_sched_init(
+        const model_net_sched_cfg_params * params,
+        int is_recv_queue,
+        struct model_net_method *method,
+        model_net_sched *sched);
+
+/// schedules the next chunk, storing any info needed for rc in sched_rc
+/// packet issue time is placed in poffset to be able to separate packet calls
+/// between multiple scheduler events
+/// returns: 
+/// * 0 on success,
+/// * 1 on success and the corresponding request is finished. In this case,
+///   out_req is set to the underlying request
+/// * -1 when there is nothing to be scheduled
+int model_net_sched_next(
+        tw_stime *poffset,
+        model_net_sched *sched,
+        void *rc_event_save,
+        model_net_sched_rc *sched_rc,
+        tw_lp *lp);
+
+void model_net_sched_next_rc(
+        model_net_sched *sched,
+        const void *rc_event_save,
+        const model_net_sched_rc *sched_rc,
+        tw_lp *lp);
+
+/// enter a new request into the scheduler, storing any info needed for rc in
+/// sched_rc
+/// sched_msg_params is scheduler-specific parameters (currently only used by
+/// prio scheduler)
+void model_net_sched_add(
+        const model_net_request *req,
+        const mn_sched_params * sched_params,
+        int remote_event_size,
+        void * remote_event,
+        int local_event_size,
+        void * local_event,
+        model_net_sched *sched,
+        model_net_sched_rc *sched_rc,
+        tw_lp *lp);
+
+void model_net_sched_add_rc(
+        model_net_sched *sched,
+        const model_net_sched_rc *sched_rc,
+        tw_lp *lp);
+
+// set default parameters for messages that don't specify any
+void model_net_sched_set_default_params(mn_sched_params *sched_params);
+
+extern char * sched_names[];
+
+#endif /* end of include guard: MODEL_NET_SCHED_H */
+
+/*
+ * Local variables:
+ *  c-indent-level: 4
+ *  c-basic-offset: 4
+ * End:
+ *
+ * vim: ft=c ts=8 sts=4 sw=4 expandtab
+ */

codes/model-net.h

+/*
+ * Copyright (C) 2013 University of Chicago.
+ * See COPYRIGHT notice in top-level directory.
+ *
+ */
+
+#ifndef MODELNET_H
+#define MODELNET_H
+
+#include <ross.h>
+#include <codes/lp-type-lookup.h>
+#include <codes/configuration.h>
+#include <codes/lp-io.h>
+#include <codes/codes-mapping-context.h>
+#include <stdint.h>
+
+#define PULL_MSG_SIZE 128
+
+#define MAX_NAME_LENGTH 256
+#define CATEGORY_NAME_MAX 16
+#define CATEGORY_MAX 12
+
+// simple deprecation attribute hacking
+#if !defined(DEPRECATED)
+#  if defined(__GNUC__) || defined(__GNUG__) || defined(__clang__)
+#    define DEPRECATED __attribute__((deprecated))
+#  else
+#    define DEPRECATED
+#  endif
+#endif
+
+/* HACK: there is currently no scheduling fidelity across multiple
+ * model_net_event calls. Hence, problems arise when some LP sends multiple
+ * messages as part of an event and expects FCFS ordering. A proper fix which
+ * involves model-net LP-level scheduling of requests is ideal, but not 
+ * feasible for now (would basically have to redesign model-net), so expose
+ * explicit start-sequence and stop-sequence markers as a workaround
+ */
+extern int mn_in_sequence;
+extern tw_stime mn_msg_offset;
+#define MN_START_SEQ() do {\
+    mn_in_sequence = 1; \
+    mn_msg_offset = 0.0; \
+} while (0)
+#define MN_END_SEQ() do {\
+    mn_in_sequence = 0;\
+} while (0)
+
+
+typedef struct mn_stats mn_stats;
+
+// use the X-macro to get types and names rolled up into one structure
+// format: { enum vals, config name, internal lp name, lp method struct}
+// last value is sentinel
+#define NETWORK_DEF \
+    X(SIMPLENET, "modelnet_simplenet", "simplenet", &simplenet_method)\
+    X(SIMPLEP2P, "modelnet_simplep2p", "simplep2p", &simplep2p_method)\
+    X(TORUS,     "modelnet_torus",     "torus",     &torus_method)\
+    X(DRAGONFLY, "modelnet_dragonfly", "dragonfly", &dragonfly_method)\
+    X(LOGGP,     "modelnet_loggp",     "loggp",     &loggp_method)\
+    X(MAX_NETS,  NULL,                 NULL,        NULL)
+
+#define X(a,b,c,d) a,
+enum NETWORKS
+{
+    NETWORK_DEF
+};
+#undef X
+
+// message parameter types
+enum msg_param_type {
+    // parameters for modelnet-scheduler (priorities and such)
+    MN_MSG_PARAM_SCHED,
+    // parameter allowing the explicit setting of a messages start time (useful
+    // for routing scenarios in which a single message is implemented in terms
+    // of multiple model-net events, such as for model_net_pull_*event's)
+    MN_MSG_PARAM_START_TIME,
+    MAX_MN_MSG_PARAM_TYPES
+};
+
+// MN_MSG_PARAM_MSG_START_TIME parameter types (only one for the time being)
+enum msg_param_start_time {