darshan-mpiio.c 20.8 KB
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/*
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 * Copyright (C) 2015 University of Chicago.
 * See COPYRIGHT notice in top-level directory.
 *
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 */

#include "darshan-runtime-config.h"
#include <stdio.h>
#include <unistd.h>
#include <sys/types.h>
#include <sys/stat.h>
#include <fcntl.h>
#include <stdarg.h>
#include <string.h>
#include <time.h>
#include <stdlib.h>
#include <errno.h>
#include <sys/uio.h>
#include <sys/mman.h>
#include <search.h>
#include <assert.h>
#include <libgen.h>
#include <aio.h>
#define __USE_GNU
#include <pthread.h>

#include "uthash.h"
#include "darshan.h"
#include "darshan-mpiio-log-format.h"

struct mpiio_runtime_file
{
    struct darshan_mpiio_file* file_record;
    UT_hash_handle hlink;
};

struct mpiio_runtime_file_ref
{
    struct mpiio_runtime_file* file;
    int fd;
    UT_hash_handle hlink;
};

struct mpiio_runtime
{
    struct mpiio_runtime_file* file_runtime_array;
    struct darshan_mpiio_file* file_record_array;
    int file_array_size;
    int file_array_ndx;
    struct mpiio_runtime_file* file_hash;
    struct mpiio_runtime_file_ref* fd_hash;
    void *red_buf;
    int shared_rec_count;
};

static struct mpiio_runtime *mpiio_runtime = NULL;
static pthread_mutex_t mpiio_runtime_mutex = PTHREAD_RECURSIVE_MUTEX_INITIALIZER_NP;
static int instrumentation_disabled = 0;
static int my_rank = -1;

#define MPIIO_LOCK() pthread_mutex_lock(&mpiio_runtime_mutex)
#define MPIIO_UNLOCK() pthread_mutex_unlock(&mpiio_runtime_mutex)

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static void mpiio_runtime_initialize(void);
static void mpiio_disable_instrumentation(void);
static void mpiio_shutdown(void);
static void mpiio_get_output_data(
    void **buffer,
    int *size);

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#ifdef HAVE_MPIIO_CONST
int MPI_File_open(MPI_Comm comm, const char *filename, int amode, MPI_Info info, MPI_File *fh) 
#else
int MPI_File_open(MPI_Comm comm, char *filename, int amode, MPI_Info info, MPI_File *fh) 
#endif
{
    int ret;
    struct darshan_file_runtime* file;
    char* tmp;
    int comm_size;
    double tm1, tm2;

    tm1 = darshan_core_wtime();
    ret = DARSHAN_MPI_CALL(PMPI_File_open)(comm, filename, amode, info, fh);
    tm2 = darshan_core_wtime();

    if(ret == MPI_SUCCESS)
    {
        MPIIO_LOCK();
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        mpiio_runtime_initialize();
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        /* use ROMIO approach to strip prefix if present */
        /* strip off prefix if there is one, but only skip prefixes
         * if they are greater than length one to allow for windows
         * drive specifications (e.g. c:\...) 
         */
        tmp = strchr(filename, ':');
        if (tmp > filename + 1) {
            filename = tmp + 1;
        }

        /* TODO: record statistics */
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        //printf("HELLO WORLD!\n");
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#if 0
        file = darshan_file_by_name_setfh(filename, (*fh));
        if(file)
        {
            CP_SET(file, CP_MODE, amode);
            CP_F_INC_NO_OVERLAP(file, tm1, tm2, file->last_mpi_meta_end, CP_F_MPI_META_TIME);
            if(CP_F_VALUE(file, CP_F_OPEN_TIMESTAMP) == 0)
                CP_F_SET(file, CP_F_OPEN_TIMESTAMP,
                tm1);
            DARSHAN_MPI_CALL(PMPI_Comm_size)(comm, &comm_size);
            if(comm_size == 1)
            {
                CP_INC(file, CP_INDEP_OPENS, 1);
            }
            else
            {
                CP_INC(file, CP_COLL_OPENS, 1);
            }
            if(info != MPI_INFO_NULL)
            {
                CP_INC(file, CP_HINTS, 1);
            }
        }
#endif

        MPIIO_UNLOCK();
    }

    return(ret);
}

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static void mpiio_runtime_initialize()
{
    int ret;
    int mem_limit;
    struct darshan_module_funcs mpiio_mod_fns =
    {
        .disable_instrumentation = &mpiio_disable_instrumentation,
        .prepare_for_reduction = NULL,
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        .record_reduction_op = NULL,
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        .get_output_data = &mpiio_get_output_data,
        .shutdown = &mpiio_shutdown
    };

    /* don't do anything if already initialized or instrumenation is disabled */
    if(mpiio_runtime || instrumentation_disabled)
        return;

    /* register the mpiio module with darshan core */
    darshan_core_register_module(
        DARSHAN_MPIIO_MOD,
        &mpiio_mod_fns,
        &mem_limit);

    /* return if no memory assigned by darshan core */
    if(mem_limit == 0)
        return;

    mpiio_runtime = malloc(sizeof(*mpiio_runtime));
    if(!mpiio_runtime)
        return;
    memset(mpiio_runtime, 0, sizeof(*mpiio_runtime));

    /* set maximum number of file records according to max memory limit */
    /* NOTE: maximum number of records is based on the size of a mpiio file record */
    mpiio_runtime->file_array_size = mem_limit / sizeof(struct darshan_mpiio_file);
    mpiio_runtime->file_array_ndx = 0;

    /* allocate array of runtime file records */
    mpiio_runtime->file_runtime_array = malloc(mpiio_runtime->file_array_size *
                                               sizeof(struct mpiio_runtime_file));
    mpiio_runtime->file_record_array = malloc(mpiio_runtime->file_array_size *
                                              sizeof(struct darshan_mpiio_file));
    if(!mpiio_runtime->file_runtime_array || !mpiio_runtime->file_record_array)
    {
        mpiio_runtime->file_array_size = 0;
        return;
    }
    memset(mpiio_runtime->file_runtime_array, 0, mpiio_runtime->file_array_size *
           sizeof(struct mpiio_runtime_file));
    memset(mpiio_runtime->file_record_array, 0, mpiio_runtime->file_array_size *
           sizeof(struct darshan_mpiio_file));

    /* TODO: can we move this out of here? perhaps register_module returns rank? */
    DARSHAN_MPI_CALL(PMPI_Comm_rank)(MPI_COMM_WORLD, &my_rank);

    return;
}

static void mpiio_disable_instrumentation()
{
    assert(mpiio_runtime);

    MPIIO_LOCK();
    instrumentation_disabled = 1;
    MPIIO_UNLOCK();

    return;
}

static void mpiio_get_output_data(
    void **buffer,
    int *size)
{
    assert(mpiio_runtime);

    /* TODO: clean up reduction stuff */

    *buffer = (void *)(mpiio_runtime->file_record_array);
    *size = mpiio_runtime->file_array_ndx * sizeof(struct darshan_mpiio_file);

    return;
}

static void mpiio_shutdown()
{
    struct mpiio_runtime_file_ref *ref, *tmp;

    HASH_ITER(hlink, mpiio_runtime->fd_hash, ref, tmp)
    {
        HASH_DELETE(hlink, mpiio_runtime->fd_hash, ref);
        free(ref);
    }

    HASH_CLEAR(hlink, mpiio_runtime->file_hash); /* these entries are freed all at once below */

    free(mpiio_runtime->file_runtime_array);
    free(mpiio_runtime->file_record_array);
    free(mpiio_runtime);
    mpiio_runtime = NULL;

    return;
}
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#if 0
static struct posix_runtime_file* posix_file_by_name(const char *name);
static struct posix_runtime_file* posix_file_by_name_setfd(const char* name, int fd);
static struct posix_runtime_file* posix_file_by_fd(int fd);
static void posix_file_close_fd(int fd);

static void posix_prepare_for_reduction(darshan_record_id *shared_recs,
    int *shared_rec_count, void **send_buf, void **recv_buf, int *rec_size);
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static void posix_record_reduction_op(void* infile_v, void* inoutfile_v,
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    int *len, MPI_Datatype *datatype);
static void posix_get_output_data(void **buffer, int *size);
static void posix_shutdown(void);

#define POSIX_SET(__file, __counter, __value) do {\
    (__file)->file_record->counters[__counter] = __value; \
} while(0)

#define POSIX_F_SET(__file, __counter, __value) do {\
    (__file)->file_record->fcounters[__counter] = __value; \
} while(0)

#define POSIX_INC(__file, __counter, __value) do {\
    (__file)->file_record->counters[__counter] += __value; \
} while(0)

#define POSIX_F_INC(__file, __counter, __value) do {\
    (__file)->file_record->fcounters[__counter] += __value; \
} while(0)

#define POSIX_F_INC_NO_OVERLAP(__file, __tm1, __tm2, __last, __counter) do { \
    if(__tm1 > __last) \
        POSIX_F_INC(__file, __counter, (__tm2-__tm1)); \
    else \
        POSIX_F_INC(__file, __counter, (__tm2 - __last)); \
    if(__tm2 > __last) \
        __last = __tm2; \
} while(0)

#define POSIX_VALUE(__file, __counter) \
    ((__file)->file_record->counters[__counter])

#define POSIX_F_VALUE(__file, __counter) \
    ((__file)->file_record->fcounters[__counter])

#define POSIX_MAX(__file, __counter, __value) do {\
    if((__file)->file_record->counters[__counter] < __value) \
    { \
        (__file)->file_record->counters[__counter] = __value; \
    } \
} while(0)

#define POSIX_RECORD_OPEN(__ret, __path, __mode, __stream_flag, __tm1, __tm2) do { \
    struct posix_runtime_file* file; \
    char* exclude; \
    int tmp_index = 0; \
    if(__ret < 0) break; \
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    while((exclude = darshan_path_exclusions[tmp_index])) { \
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        if(!(strncmp(exclude, __path, strlen(exclude)))) \
            break; \
        tmp_index++; \
    } \
    if(exclude) break; \
    file = posix_file_by_name_setfd(__path, __ret); \
    if(!file) break; \
    file->file_record->rank = my_rank; \
    if(__mode) \
        POSIX_SET(file, CP_MODE, __mode); \
    if(__stream_flag)\
        POSIX_INC(file, CP_POSIX_FOPENS, 1); \
    else \
        POSIX_INC(file, CP_POSIX_OPENS, 1); \
    if(POSIX_F_VALUE(file, CP_F_OPEN_TIMESTAMP) == 0) \
        POSIX_F_SET(file, CP_F_OPEN_TIMESTAMP, __tm1); \
} while(0)

int DARSHAN_DECL(open)(const char *path, int flags, ...)
{
    int mode = 0;
    int ret;
    double tm1, tm2;

    MAP_OR_FAIL(open);

    if(flags & O_CREAT) 
    {
        va_list arg;
        va_start(arg, flags);
        mode = va_arg(arg, int);
        va_end(arg);

        tm1 = darshan_core_wtime();
        ret = __real_open(path, flags, mode);
        tm2 = darshan_core_wtime();
    }
    else
    {
        tm1 = darshan_core_wtime();
        ret = __real_open(path, flags);
        tm2 = darshan_core_wtime();
    }

    POSIX_LOCK();
    posix_runtime_initialize();

    POSIX_RECORD_OPEN(ret, path, mode, 0, tm1, tm2);

    POSIX_UNLOCK();

    return(ret);
}

int DARSHAN_DECL(open64)(const char *path, int flags, ...)
{
    int mode = 0;
    int ret;
    double tm1, tm2;

    MAP_OR_FAIL(open64);

    if(flags & O_CREAT)
    {
        va_list arg;
        va_start(arg, flags);
        mode = va_arg(arg, int);
        va_end(arg);

        tm1 = darshan_core_wtime();
        ret = __real_open64(path, flags, mode);
        tm2 = darshan_core_wtime();
    }
    else
    {
        tm1 = darshan_core_wtime();
        ret = __real_open64(path, flags);
        tm2 = darshan_core_wtime();
    }

    POSIX_LOCK();
    posix_runtime_initialize();

    POSIX_RECORD_OPEN(ret, path, mode, 0, tm1, tm2);
    POSIX_UNLOCK();

    return(ret);
}

int DARSHAN_DECL(close)(int fd)
{
    struct posix_runtime_file* file;
    double tm1, tm2;
    int ret;

    MAP_OR_FAIL(close);

    tm1 = darshan_core_wtime();
    ret = __real_close(fd);
    tm2 = darshan_core_wtime();

    POSIX_LOCK();
    posix_runtime_initialize();

    file = posix_file_by_fd(fd);
    if(file)
    {
        POSIX_F_SET(file, CP_F_CLOSE_TIMESTAMP, darshan_core_wtime());
        posix_file_close_fd(fd);
    }
    POSIX_UNLOCK();    

    return(ret);
}

/* ***************************************************** */

static void posix_runtime_initialize()
{
    char *alignstr;
    int tmpval;
    int ret;
    int mem_limit;
    struct darshan_module_funcs posix_mod_fns =
    {
        .disable_instrumentation = &posix_disable_instrumentation,
        .prepare_for_reduction = &posix_prepare_for_reduction,
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        .record_reduction_op = &posix_record_reduction_op,
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        .get_output_data = &posix_get_output_data,
        .shutdown = &posix_shutdown
    };

    /* don't do anything if already initialized or instrumenation is disabled */
    if(posix_runtime || instrumentation_disabled)
        return;

    /* register the posix module with darshan core */
    darshan_core_register_module(
        DARSHAN_POSIX_MOD,
        &posix_mod_fns,
        &mem_limit);

    /* return if no memory assigned by darshan core */
    if(mem_limit == 0)
        return;

    posix_runtime = malloc(sizeof(*posix_runtime));
    if(!posix_runtime)
        return;
    memset(posix_runtime, 0, sizeof(*posix_runtime));

    /* set maximum number of file records according to max memory limit */
    /* NOTE: maximum number of records is based on the size of a posix file record */
    posix_runtime->file_array_size = mem_limit / sizeof(struct darshan_posix_file);
    posix_runtime->file_array_ndx = 0;

    /* allocate array of runtime file records */
    posix_runtime->file_runtime_array = malloc(posix_runtime->file_array_size *
                                               sizeof(struct posix_runtime_file));
    posix_runtime->file_record_array = malloc(posix_runtime->file_array_size *
                                              sizeof(struct darshan_posix_file));
    if(!posix_runtime->file_runtime_array || !posix_runtime->file_record_array)
    {
        posix_runtime->file_array_size = 0;
        return;
    }
    memset(posix_runtime->file_runtime_array, 0, posix_runtime->file_array_size *
           sizeof(struct posix_runtime_file));
    memset(posix_runtime->file_record_array, 0, posix_runtime->file_array_size *
           sizeof(struct darshan_posix_file));

    /* TODO: can we move this out of here? perhaps register_module returns rank? */
    DARSHAN_MPI_CALL(PMPI_Comm_rank)(MPI_COMM_WORLD, &my_rank);

    return;
}

static struct posix_runtime_file* posix_file_by_name(const char *name)
{
    struct posix_runtime_file *file = NULL;
    char *newname = NULL;
    darshan_record_id file_id;

    if(!posix_runtime || instrumentation_disabled)
        return(NULL);

    newname = darshan_clean_file_path(name);
    if(!newname)
        newname = (char*)name;

    /* get a unique id for this file from darshan core */
    darshan_core_register_record(
        (void*)newname,
        strlen(newname),
        1,
        DARSHAN_POSIX_MOD,
        &file_id);

    /* search the hash table for this file record, and return if found */
    HASH_FIND(hlink, posix_runtime->file_hash, &file_id, sizeof(darshan_record_id), file);
    if(file)
    {
        if(newname != name)
            free(newname);
        return(file);
    }

    if(posix_runtime->file_array_ndx < posix_runtime->file_array_size);
    {
        /* no existing record, assign a new file record from the global array */
        file = &(posix_runtime->file_runtime_array[posix_runtime->file_array_ndx]);
        file->file_record = &(posix_runtime->file_record_array[posix_runtime->file_array_ndx]);
        file->file_record->f_id = file_id;

        /* add new record to file hash table */
        HASH_ADD(hlink, posix_runtime->file_hash, file_record->f_id, sizeof(darshan_record_id), file);

        posix_runtime->file_array_ndx++;
    }

    if(newname != name)
        free(newname);
    return(file);
}

static struct posix_runtime_file* posix_file_by_name_setfd(const char* name, int fd)
{
    struct posix_runtime_file* file;
    struct posix_runtime_file_ref* ref;

    if(!posix_runtime || instrumentation_disabled)
        return(NULL);

    /* find file record by name first */
    file = posix_file_by_name(name);

    if(!file)
        return(NULL);

    /* search hash table for existing file ref for this fd */
    HASH_FIND(hlink, posix_runtime->fd_hash, &fd, sizeof(int), ref);
    if(ref)
    {
        /* we have a reference.  Make sure it points to the correct file
         * and return it
         */
        ref->file = file;
        return(file);
    }

    /* if we hit this point, then we don't have a reference for this fd
     * in the table yet.  Add it.
     */
    ref = malloc(sizeof(*ref));
    if(!ref)
        return(NULL);
    memset(ref, 0, sizeof(*ref));

    ref->file = file;
    ref->fd = fd;    
    HASH_ADD(hlink, posix_runtime->fd_hash, fd, sizeof(int), ref);

    return(file);
}

static struct posix_runtime_file* posix_file_by_fd(int fd)
{
    struct posix_runtime_file_ref* ref;

    if(!posix_runtime || instrumentation_disabled)
        return(NULL);

    /* search hash table for existing file ref for this fd */
    HASH_FIND(hlink, posix_runtime->fd_hash, &fd, sizeof(int), ref);
    if(ref)
        return(ref->file);

    return(NULL);
}

static void posix_file_close_fd(int fd)
{
    struct posix_runtime_file_ref* ref;

    if(!posix_runtime || instrumentation_disabled)
        return;

    /* search hash table for this fd */
    HASH_FIND(hlink, posix_runtime->fd_hash, &fd, sizeof(int), ref);
    if(ref)
    {
        /* we have a reference, delete it */
        HASH_DELETE(hlink, posix_runtime->fd_hash, ref);
        free(ref);
    }

    return;
}

static int posix_file_compare(const void* a, const void* b)
{
    const struct darshan_posix_file* f_a = a;
    const struct darshan_posix_file* f_b = b;

    if(f_a->rank < f_b->rank)
        return 1;
    if(f_a->rank > f_b->rank)
        return -1;

    return 0;
}

/* ***************************************************** */

static void posix_prepare_for_reduction(
    darshan_record_id *shared_recs,
    int *shared_rec_count,
    void **send_buf,
    void **recv_buf,
    int *rec_size)
{
    struct posix_runtime_file *file;
    struct darshan_posix_file *tmp_array;
    int i;

    assert(posix_runtime);

    /* necessary initialization of shared records (e.g., change rank to -1) */
    for(i = 0; i < *shared_rec_count; i++)
    {
        HASH_FIND(hlink, posix_runtime->file_hash, &shared_recs[i],
            sizeof(darshan_record_id), file);
        assert(file);

        /* TODO: any initialization before reduction */
        file->file_record->rank = -1;
    }

    /* sort the array of files descending by rank so that we get all of the 
     * shared files (marked by rank -1) in a contiguous portion at end 
     * of the array
     */
    qsort(posix_runtime->file_record_array, posix_runtime->file_array_ndx,
        sizeof(struct darshan_posix_file), posix_file_compare);

    /* make *send_buf point to the shared files at the end of sorted array */
    *send_buf =
        &(posix_runtime->file_record_array[posix_runtime->file_array_ndx-(*shared_rec_count)]);

    /* allocate memory for the reduction output on rank 0 */
    if(my_rank == 0)
    {
        *recv_buf = malloc(*shared_rec_count * sizeof(struct darshan_posix_file));
        if(!(*recv_buf))
            return;
    }

    *rec_size = sizeof(struct darshan_posix_file);

    /* TODO: cleaner way to do this? */
    if(my_rank == 0)
        posix_runtime->red_buf = *recv_buf;
    posix_runtime->shared_rec_count = *shared_rec_count;

    return;
}

664
static void posix_record_reduction_op(
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    void* infile_v,
    void* inoutfile_v,
    int *len,
    MPI_Datatype *datatype)
{
    struct darshan_posix_file tmp_file;
    struct darshan_posix_file *infile = infile_v;
    struct darshan_posix_file *inoutfile = inoutfile_v;
    int i;

    assert(posix_runtime);

    for(i = 0; i < *len; i++)
    {
        memset(&tmp_file, 0, sizeof(struct darshan_posix_file));

        tmp_file.f_id = infile->f_id;
        tmp_file.rank = -1;

        tmp_file.counters[CP_POSIX_OPENS] = infile->counters[CP_POSIX_OPENS] +
            inoutfile->counters[CP_POSIX_OPENS];

        if((infile->fcounters[CP_F_OPEN_TIMESTAMP] > inoutfile->fcounters[CP_F_OPEN_TIMESTAMP]) &&
            (inoutfile->fcounters[CP_F_OPEN_TIMESTAMP] > 0))
            tmp_file.fcounters[CP_F_OPEN_TIMESTAMP] = inoutfile->fcounters[CP_F_OPEN_TIMESTAMP];
        else
            tmp_file.fcounters[CP_F_OPEN_TIMESTAMP] = infile->fcounters[CP_F_OPEN_TIMESTAMP];

        if(infile->fcounters[CP_F_CLOSE_TIMESTAMP] > inoutfile->fcounters[CP_F_CLOSE_TIMESTAMP])
            tmp_file.fcounters[CP_F_CLOSE_TIMESTAMP] = infile->fcounters[CP_F_CLOSE_TIMESTAMP];
        else
            tmp_file.fcounters[CP_F_CLOSE_TIMESTAMP] = inoutfile->fcounters[CP_F_CLOSE_TIMESTAMP];

        /* update pointers */
        *inoutfile = tmp_file;
        inoutfile++;
        infile++;
    }

    return;
}

static void posix_get_output_data(
    void **buffer,
    int *size)
{
    assert(posix_runtime);

    /* TODO: cleaner way to do this? */
    /* clean up reduction state */
    if(my_rank == 0)
    {
        int tmp_ndx = posix_runtime->file_array_ndx - posix_runtime->shared_rec_count;
        memcpy(&(posix_runtime->file_record_array[tmp_ndx]), posix_runtime->red_buf,
            posix_runtime->shared_rec_count * sizeof(struct darshan_posix_file));
        free(posix_runtime->red_buf);
    }
    else
    {
        posix_runtime->file_array_ndx -= posix_runtime->shared_rec_count;
    }

    *buffer = (void *)(posix_runtime->file_record_array);
    *size = posix_runtime->file_array_ndx * sizeof(struct darshan_posix_file);

    return;
}

static void posix_shutdown()
{
    struct posix_runtime_file_ref *ref, *tmp;

    HASH_ITER(hlink, posix_runtime->fd_hash, ref, tmp)
    {
        HASH_DELETE(hlink, posix_runtime->fd_hash, ref);
        free(ref);
    }

    HASH_CLEAR(hlink, posix_runtime->file_hash); /* these entries are freed all at once below */

    free(posix_runtime->file_runtime_array);
    free(posix_runtime->file_record_array);
    free(posix_runtime);
    posix_runtime = NULL;

    return;
}

#endif

/*
 * Local variables:
 *  c-indent-level: 4
 *  c-basic-offset: 4
 * End:
 *
 * vim: ts=8 sts=4 sw=4 expandtab
 */