pmdk-regression.qsub 3.01 KB
Newer Older
1 2 3 4
#!/bin/bash
#COBALT -n 1
#COBALT -t 20
#COBALT --mode script
5
#COBALT -A CSC250STDM12
6 7
#COBALT -q debug-cache-quad

Philip Carns's avatar
Philip Carns committed
8
export HOME=$SANDBOX
9 10 11 12 13 14 15 16 17 18
# XXX xalt module currently eating '-M' flag for mercury-runner...disabling for now
# module unload xalt

# necessary when using the udreg option in Mercury
export MPICH_GNI_NDREG_ENTRIES=1024

module swap PrgEnv-intel PrgEnv-gnu
module load cce

. $SANDBOX/spack/share/spack/setup-env.sh
Philip Carns's avatar
Philip Carns committed
19 20
spack load -r mochi-ssg
spack load -r mochi-bake
21

Rob Latham's avatar
Rob Latham committed
22
spack find --loaded
23 24 25 26 27 28 29 30 31 32

# NOTE: rpath doesn't seem to be set correctly, and the paths we need are 
#  in LIBRARY_PATH instead of LD_LIBRARY_PATH
export LD_LIBRARY_PATH=$LIBRARY_PATH

# find nodes in job.  We have to do this so that we can manually specify 
# in each aprun so that server ranks consitently run on node where we
# set up storage space
declare -a nodes=($(python /home/carns/bin/run_on_all_nids.py));

33
echo "### NOTE: all benchmarks are using aprun -cc none to allow processes to run on all available cores; the default aprun settings limit processes to one core and produce poor performance because of contention between internal threads"
34

35
echo "## PMDK (8x concurrency):"
36 37 38 39 40 41
aprun -cc none -n 1 -N 1 -L ${nodes[0]} hostname
aprun -cc none -n 1 -N 1 -L ${nodes[0]} rm -f /dev/shm/foo.dat
aprun -cc none -n 1 -N 1 -L ${nodes[0]} truncate -s 60G /dev/shm/foo.dat
aprun -cc none -n 1 -N 1 -L ${nodes[0]} pmempool create obj /dev/shm/foo.dat
aprun -cc none -n 1 -N 1 -L ${nodes[0]} ls -alh /dev/shm/foo.dat
aprun -cc none -n 1 -N 1 -L ${nodes[0]} ./pmdk-bw -x 16777216 -m 34359738368 -p /dev/shm/foo.dat -c 8 
42 43

echo "## PMDK (8x concurrency, 8 es):"
44 45 46 47 48 49
aprun -cc none -n 1 -N 1 -L ${nodes[0]} hostname
aprun -cc none -n 1 -N 1 -L ${nodes[0]} rm -f /dev/shm/foo.dat
aprun -cc none -n 1 -N 1 -L ${nodes[0]} truncate -s 60G /dev/shm/foo.dat
aprun -cc none -n 1 -N 1 -L ${nodes[0]} pmempool create obj /dev/shm/foo.dat
aprun -cc none -n 1 -N 1 -L ${nodes[0]} ls -alh /dev/shm/foo.dat
aprun -cc none -n 1 -N 1 -L ${nodes[0]} ./pmdk-bw -x 16777216 -m 34359738368 -p /dev/shm/foo.dat -c 8 -T 8
50

51
echo "## PMDK (8x concurrency, preallocated pool):"
52 53 54 55 56 57
aprun -cc none -n 1 -N 1 -L ${nodes[0]} hostname
aprun -cc none -n 1 -N 1 -L ${nodes[0]} rm -f /dev/shm/foo.dat
aprun -cc none -n 1 -N 1 -L ${nodes[0]} dd if=/dev/zero of=/dev/shm/foo.dat bs=1M count=61440
aprun -cc none -n 1 -N 1 -L ${nodes[0]} pmempool create obj /dev/shm/foo.dat
aprun -cc none -n 1 -N 1 -L ${nodes[0]} ls -alh /dev/shm/foo.dat
aprun -cc none -n 1 -N 1 -L ${nodes[0]} ./pmdk-bw -x 16777216 -m 34359738368 -p /dev/shm/foo.dat -c 8 
58 59

echo "## PMDK (8x concurrency, 8 es, preallocated pool):"
60 61 62 63 64 65
aprun -cc none -n 1 -N 1 -L ${nodes[0]} hostname
aprun -cc none -n 1 -N 1 -L ${nodes[0]} rm -f /dev/shm/foo.dat
aprun -cc none -n 1 -N 1 -L ${nodes[0]} dd if=/dev/zero of=/dev/shm/foo.dat bs=1M count=61440
aprun -cc none -n 1 -N 1 -L ${nodes[0]} pmempool create obj /dev/shm/foo.dat
aprun -cc none -n 1 -N 1 -L ${nodes[0]} ls -alh /dev/shm/foo.dat
aprun -cc none -n 1 -N 1 -L ${nodes[0]} ./pmdk-bw -x 16777216 -m 34359738368 -p /dev/shm/foo.dat -c 8 -T 8
66