Forgot to add nek.mk.in

nek.mk.in

+# == Source and destination directories ============================================================
+VPATH    := @srcdir@/Nek5000/core:@srcdir@/Nek5000/core/cmt:@srcdir@/Nek5000/core/3rd_party:@srcdir@/Nek5000/jl
+srcdir   := @srcdir@
+builddir := @builddir@
+nek_includedir := @builddir@/include
+
+# == Discovered by autoconf script
+nek_CFLAGS   := @CFLAGS@
+nek_INCLUDES := -I$(builddir) -I$(nek_includedir) -I$(srcdir)/Nek5000/core -I$(srcdir)/Nek5000/core/cmt -I$(srcdir)/Nek5000/core/3rd_party -I$(srcdir)/Nek5000/jl
+nek_CPPFLAGS := @CPPFLAGS@ @DEFS@ $(nek_INCLUDES)
+nek_LDFLAGS  := @LDFLAG@
+nek_LIBS     := @LIBS@
+
+nek_FFLAGS   := @FFLAGS@ @FCFLAGS_f@ $(subst -D, @FC_DEFINE@, @DEFS@) $(nek_INCLUDES)
+nek_FLIBS    := @FLIBS@
+
+nek_debug_flags := @nek_debug_flags@
+nek_opt_flags   := @nek_opt_flags@
+nek_real8_flags := @nek_real8_flags@
+jl_prefix       := @jl_prefix@
+
+# == FORTRAN objects ===============================================================================
+nek_core_f_obj := $(addsuffix .$(obj-suffix), \
+                  drive1 drive2 plan4 bdry coef conduct connect1 connect2 \
+                  dssum edgec eigsolv gauss genxyz navier1 makeq navier0 \
+                  navier2 navier3 navier4 prepost speclib map2 turb mvmesh ic \
+                  ssolv planx mxm_wrapper hmholtz gfdm_par  gfdm_op gfdm_solve \
+                  subs1 subs2 genbox gmres hsmg convect induct perturb navier5 \
+                  navier6 navier7 navier8 fast3d fasts calcz postpro \
+                  cvode_driver vprops qthermal cvode_aux makeq_aux papi nek_in_situ \
+                  readat_new @CASENAME@)
+
+nek_math_obj   := $(addsuffix .$(obj-suffix), math)
+nek_blas_obj   := $(addsuffix .$(obj-suffix), @nek_blas_obj@)   # blas.o | null
+nek_cmt_obj    := $(addsuffix .$(obj-suffix), @nek_cmt_obj@)    # drive1_cmt.o ... | cmt_dummy.o
+nek_lapack_obj := $(addsuffix .$(obj-suffix), @nek_lapack_obj@) # dsygv.o ssygv.o | null
+nek_mpi_obj    := $(addsuffix .$(obj-suffix), @nek_mpi_obj@)    # byte_mpi.o comm_mpi.o | byte_mpi.o comm_mpi.o mpi_dummy.o
+nek_mxm_obj    := $(addsuffix .$(obj-suffix), @nek_mxm_obj@)    # mxm_std.o | mxm_std.o mxm_bgq.o
+nek_neknek_obj := $(addsuffix .$(obj-suffix), @nek_neknek_obj@) # singlmesh.o | multimesh.o
+
+nek_flib_obj   := $(nek_core_f_obj) $(nek_math_obj) $(nek_blas_obj) $(nek_cmt_obj) \
+                  $(nek_lapack_obj) $(nek_mpi_obj) $(nek_mxm_obj) $(nek_neknek_obj)
+
+# == C objects =====================================================================================
+nek_core_c_obj := $(addsuffix .$(obj-suffix), \
+                  byte chelpers nek_comm finiparser iniparser dictionary)
+
+jl_core_obj    := $(patsubst %, $(jl_prefix)%.$(obj-suffix), \
+                  gs sort sarray_transfer sarray_sort gs_local crystal comm tensor fail fcrystal)
+jl_interp_obj  := $(patsubst %, $(jl_prefix)%.$(obj-suffix), \
+                  findpts findpts_local obbox poly lob_bnd findpts_el_3 findpts_el_2)
+jl_cgs_obj     := $(patsubst %, $(jl_prefix)%.$(obj-suffix), @jl_cgs_obj@)
+
+nek_clib_obj   := $(nek_core_c_obj) $(jl_core_obj) $(jl_interp_obj) $(jl_cgs_obj)
+
+# == MOOSE app flags and objects ==================================================================
+# Recursive definition (= rather than :=) is probably the right usage, since they're probably 
+# defined here after they're referenced by MOOSE makefile
+
+ADDITIONAL_CPPFLAGS = @CPPFLAGS@                         # Used by pattern rules in moose/framework/build.mk
+                                                         # Can't use Nek's DEFS here because the interfere with MOOSE
+ADDITIONAL_INCLUDES = $(nek_INCLUDES)                    # Used by pattern rules in moose/framework/build.mk (through app_INCLUDES)
+ADDITIONAL_LIBS     = $(nek_LIBS) $(nek_FLIBS)           # Used during linking in moose/framework/app.mk
+ADDITIONAL_APP_OBJECTS = $(nek_flib_obj) $(nek_clib_obj) # Added to dependencies in moose/framework/app.mk
+
+# == Rules =========================================================================================
+$(nek_core_f_obj) $(nek_cmt_obj) $(nek_math_obj) $(nek_mxm_obj): %.$(obj-suffix): %.f SIZE
+	@echo "Nek5000 Compiling Fortran (in "$(METHOD)" mode) "$<"..."
+	@$(libmesh_LIBTOOL) --tag=F77 $(LIBTOOLFLAGS) --mode=compile --quiet \
+	  $(libmesh_F77) $(nek_FFLAGS) $(nek_real8_flags) -c $< -o $@
+
+$(nek_mpi_obj) $(nek_neknek_obj): %.$(obj-suffix): %.f SIZE mpiheader
+	@echo "Nek5000 Compiling Fortran (in "$(METHOD)" mode) "$<"..."
+	@$(libmesh_LIBTOOL) --tag=F77 $(LIBTOOLFLAGS) --mode=compile --quiet \
+	  $(libmesh_F77) $(nek_FFLAGS) $(nek_real8_flags) -c $< -o $@
+
+$(nek_core_c_obj): %.$(obj-suffix): %.c
+	@echo "Nek5000 Compiling C (in "$(METHOD)" mode) "$<"..."
+	@$(libmesh_LIBTOOL) --tag=CC $(LIBTOOLFLAGS) --mode=compile --quiet \
+	  $(libmesh_CC) $(nek_CPPFLAGS) $(nek_CFLAGS) -MMD -MP -MF $@.d -MT $@ -c $< -o $@
+
+$(jl_core_obj) $(jl_interp_obj) $(jl_cgs_obj): $(jl_prefix)%.$(obj-suffix): %.c
+	@echo "Nek5000 Compiling C (in "$(METHOD)" mode) "$<"..."
+	@$(libmesh_LIBTOOL) --tag=CC $(LIBTOOLFLAGS) --mode=compile --quiet \
+	  $(libmesh_CC) $(nek_CPPFLAGS) $(nek_CFLAGS) -MMD -MP -MF $@.d -MT $@ -c $< -o $@
+
+mpiheader: | $(nek_includedir)
+ifneq ($(findstring mpi_dummy.o, $(nek_mpi_obj)),)
+	cp $(srcdir)/Nek5000/core/mpi_dummy.h $(nek_includedir)/mpif.h
+else
+	rm -rf $(srcdir)/Nek5000/core/mpif.h $(nek_includedir)/mpif.h
+endif
+
+$(objdir) $(nek_includedir):
+	mkdir -p $@