apply copyright

COPYRIGHT

+
+				  COPYRIGHT
+
+The following is a notice of limited availability of the code, and disclaimer
+which must be included in the prologue of the code and in all source listings
+of the code.
+
+Copyright Notice
+ + 2013 University of Chicago
+
+Permission is hereby granted to use, reproduce, prepare derivative works, and
+to redistribute to others.  This software was authored by:
+
+Mathematics and Computer Science Division
+Argonne National Laboratory, Argonne IL 60439
+
+(and)
+
+Computer Science Department
+Rensselaer Polytechnic Institute, Troy NY 12180
+
+			      GOVERNMENT LICENSE
+
+Portions of this material resulted from work developed under a U.S.
+Government Contract and are subject to the following license: the Government
+is granted for itself and others acting on its behalf a paid-up, nonexclusive,
+irrevocable worldwide license in this computer software to reproduce, prepare
+derivative works, and perform publicly and display publicly.
+
+				  DISCLAIMER
+
+This computer code material was prepared, in part, as an account of work
+sponsored by an agency of the United States Government.  Neither the United
+States, nor the University of Chicago, nor any of their employees, makes any
+warranty express or implied, or assumes any legal liability or responsibility
+for the accuracy, completeness, or usefulness of any information, apparatus,
+product, or process disclosed, or represents that its use would not infringe
+privately owned rights.

codes/CodesIOKernelContext.h

+/*
+ * Copyright (C) 2013 University of Chicago.
+ * See COPYRIGHT notice in top-level directory.
+ *
+ */
+
 #ifndef CODESIOKERNELCONTEXT_H
 #define CODESIOKERNELCONTEXT_H
 
@@ -30,3 +36,12 @@ void CodesIOKernelScannerSetSymTable(
     CodesIOKernelContext * context);
 
 #endif
+
+/*
+ * Local variables:
+ *  c-indent-level: 4
+ *  c-basic-offset: 4
+ * End:
+ *
+ * vim: ts=8 sts=4 sw=4 expandtab
+ */

codes/CodesIOKernelParser.h

+/*
+ * Copyright (C) 2013 University of Chicago.
+ * See COPYRIGHT notice in top-level directory.
+ *
+ */
+
 #ifndef CODESIOKERNELPARSER_H
 #define CODESIOKERNELPARSER_H
 
@@ -10,3 +16,12 @@ int CodesIOKernel_lex(YYSTYPE * lvalp, YYLTYPE * llocp, void * scanner);
 //YY_BUFFER_STATE CodesIOKernel__scan_string (yyconst char *yy_str ,yyscan_t yyscanner);
 
 #endif
+
+/*
+ * Local variables:
+ *  c-indent-level: 4
+ *  c-basic-offset: 4
+ * End:
+ *
+ * vim: ts=8 sts=4 sw=4 expandtab
+ */

codes/CodesIOKernelTypes.h

+/*
+ * Copyright (C) 2013 University of Chicago.
+ * See COPYRIGHT notice in top-level directory.
+ *
+ */
+
 #ifndef CODES_H
 #define CODES_H
 
@@ -65,3 +71,12 @@ extern int * inst_ready;
 extern int * group_rank;
 extern int * group_size;
 #endif
+
+/*
+ * Local variables:
+ *  c-indent-level: 4
+ *  c-basic-offset: 4
+ * End:
+ *
+ * vim: ts=8 sts=4 sw=4 expandtab
+ */

codes/CodesKernelHelpers.h

+/*
+ * Copyright (C) 2013 University of Chicago.
+ * See COPYRIGHT notice in top-level directory.
+ *
+ */
+
 #ifndef CODE_KERNEL_HELPERS_H
 #define CODE_KERNEL_HELPERS_H
 
@@ -61,3 +67,12 @@ int codes_kernel_helper_bootstrap(char * io_kernel_path, char * def_io_kernel_pa
 char * code_kernel_helpers_cleventToStr(int inst);
 char * code_kernel_helpers_kinstToStr(int inst);
 #endif
+
+/*
+ * Local variables:
+ *  c-indent-level: 4
+ *  c-basic-offset: 4
+ * End:
+ *
+ * vim: ts=8 sts=4 sw=4 expandtab
+ */

codes/codes.h

 /*
- * Copyright (C) 2013, University of Chicago
- *
+ * Copyright (C) 2013 University of Chicago.
  * See COPYRIGHT notice in top-level directory.
+ *
  */
 
+
 #ifndef CODES_H
 #define CODES_H
 

codes/codes_mapping.h

 /*
- * Copyright (C) 2011, University of Chicago
- *
+ * Copyright (C) 2013 University of Chicago.
  * See COPYRIGHT notice in top-level directory.
+ *
  */
 
 /* SUMMARY:
@@ -34,3 +34,12 @@ void codes_mapping_get_lp_id(char* grp_name, char* lp_type_name, int rep_id, int
  * (for multiple LPs in a repetition). */
 void codes_mapping_get_lp_info(tw_lpid gid, char* grp_name, int* grp_id, int* lp_type_id, char* lp_type_name, int* grp_rep_id, int* offset);
 
+
+/*
+ * Local variables:
+ *  c-indent-level: 4
+ *  c-basic-offset: 4
+ * End:
+ *
+ * vim: ts=8 sts=4 sw=4 expandtab
+ */

codes/codeslogging.h

+/*
+ * Copyright (C) 2013 University of Chicago.
+ * See COPYRIGHT notice in top-level directory.
+ *
+ */
+
 /*
  * (C) 2001 Clemson University and The University of Chicago
  *

codes/configfile.h

+/*
+ * Copyright (C) 2013 University of Chicago.
+ * See COPYRIGHT notice in top-level directory.
+ *
+ */
+
 #ifndef SRC_COMMON_MODELCONFIG_CONFIGFILE_H
 #define SRC_COMMON_MODELCONFIG_CONFIGFILE_H
 
@@ -160,3 +166,12 @@ static inline int cf_createKey (ConfigHandle handle, SectionHandle section,
 #endif
 
 #endif
+
+/*
+ * Local variables:
+ *  c-indent-level: 4
+ *  c-basic-offset: 4
+ * End:
+ *
+ * vim: ts=8 sts=4 sw=4 expandtab
+ */

codes/configuration.h

+/*
+ * Copyright (C) 2013 University of Chicago.
+ * See COPYRIGHT notice in top-level directory.
+ *
+ */
+
 #ifndef __CONFIGURATION_H__
 #define __CONFIGURATION_H__
 
@@ -141,3 +147,12 @@ int configuration_get_lpgroups (ConfigHandle *handle,
 extern ConfigHandle config;
 
 #endif
+
+/*
+ * Local variables:
+ *  c-indent-level: 4
+ *  c-basic-offset: 4
+ * End:
+ *
+ * vim: ts=8 sts=4 sw=4 expandtab
+ */

codes/jenkins-hash.h

+/*
+ * Copyright (C) 2013 University of Chicago.
+ * See COPYRIGHT notice in top-level directory.
+ *
+ */
+
 #ifndef __JENKINS_HASH__
 #define __JENKINS_HASH__
 
@@ -34,3 +40,12 @@ void bj_hashlittle2(
 #define bj_hashmask(n) (bj_hashsize(n)-1)
 
 #endif
+
+/*
+ * Local variables:
+ *  c-indent-level: 4
+ *  c-basic-offset: 4
+ * End:
+ *
+ * vim: ts=8 sts=4 sw=4 expandtab
+ */

codes/lp-io.h

 /*
- * Copyright (C) 2011, University of Chicago
- *
+ * Copyright (C) 2013 University of Chicago.
  * See COPYRIGHT notice in top-level directory.
+ *
  */
 
 #ifndef LP_IO_H

codes/lp-type-lookup.h

 /*
- * Copyright (C) 2013, University of Chicago
- *
+ * Copyright (C) 2013 University of Chicago.
  * See COPYRIGHT notice in top-level directory.
+ *
  */
 
+
 #ifndef LP_TYPE_LOOKUP_H
 #define LP_TYPE_LOOKUP_H
 

codes/quickhash.h

+/*
+ * Copyright (C) 2013 University of Chicago.
+ * See COPYRIGHT notice in top-level directory.
+ *
+ */
+
 /* 2001 Clemson University and The University of Chicago
  *
  * See COPYING in top-level directory.
@@ -327,3 +333,12 @@ static inline int quickhash_null32_hash(void *k, int table_size)
 }
 
 #endif /* SRC_COMMON_UTIL_QUICKHASH_H */
+
+/*
+ * Local variables:
+ *  c-indent-level: 4
+ *  c-basic-offset: 4
+ * End:
+ *
+ * vim: ts=8 sts=4 sw=4 expandtab
+ */

codes/quicklist.h

+/*
+ * Copyright (C) 2013 University of Chicago.
+ * See COPYRIGHT notice in top-level directory.
+ *
+ */
+
 /*
  * (C) 2001 Clemson University and The University of Chicago
  *

codes/timeline.h

 /*
- * Copyright (C) 2012, University of Chicago
- *
+ * Copyright (C) 2013 University of Chicago.
  * See COPYRIGHT notice in top-level directory.
+ *
  */
 
 /*
@@ -65,3 +65,12 @@ void timeline_finalize(void);
 #endif
 
 #endif
+
+/*
+ * Local variables:
+ *  c-indent-level: 4
+ *  c-basic-offset: 4
+ * End:
+ *
+ * vim: ts=8 sts=4 sw=4 expandtab
+ */

codes/tools.h

+/*
+ * Copyright (C) 2013 University of Chicago.
+ * See COPYRIGHT notice in top-level directory.
+ *
+ */
+
 #ifndef SRC_COMMON_UTIL_TOOLS_H
 #define SRC_COMMON_UTIL_TOOLS_H
 
@@ -39,3 +45,12 @@ do                                                  \
 }while(0)
 
 #endif
+
+/*
+ * Local variables:
+ *  c-indent-level: 4
+ *  c-basic-offset: 4
+ * End:
+ *
+ * vim: ts=8 sts=4 sw=4 expandtab
+ */

codes/txt_configfile.h

+/*
+ * Copyright (C) 2013 University of Chicago.
+ * See COPYRIGHT notice in top-level directory.
+ *
+ */
+
 #ifndef SRC_COMMON_MODELCONFIG_TXTFILE_CONFIGFILE_H
 #define SRC_COMMON_MODELCONFIG_TXTFILE_CONFIGFILE_H
 
@@ -46,3 +52,12 @@ int txtfile_writeConfig (ConfigHandle h, SectionHandle h2, FILE * out, char ** e
 #endif
 
 #endif
+
+/*
+ * Local variables:
+ *  c-indent-level: 4
+ *  c-basic-offset: 4
+ * End:
+ *
+ * vim: ts=8 sts=4 sw=4 expandtab
+ */

src/iokernellang/CodesKernelHelpers.c

+/*
+ * Copyright (C) 2013 University of Chicago.
+ * See COPYRIGHT notice in top-level directory.
+ *
+ */
+
 #include "codes/CodesKernelHelpers.h"
 
 #include <stdlib.h>
@@ -337,3 +343,12 @@ int codes_kernel_helper_bootstrap(char * io_kernel_path, char *
 
     return t;
 }
+
+/*
+ * Local variables:
+ *  c-indent-level: 4
+ *  c-basic-offset: 4
+ * End:
+ *
+ * vim: ts=8 sts=4 sw=4 expandtab
+ */

src/iokernellang/codesImpl.c

+/*
+ * Copyright (C) 2013 University of Chicago.
+ * See COPYRIGHT notice in top-level directory.
+ *
+ */
+
 #include <inttypes.h>
 #include <stdio.h>
 #include <stdlib.h>
@@ -346,3 +352,12 @@ int64_t ex(
     }
     return 0;
 }
+
+/*
+ * Local variables:
+ *  c-indent-level: 4
+ *  c-basic-offset: 4
+ * End:
+ *
+ * vim: ts=8 sts=4 sw=4 expandtab
+ */

src/logging/codeslogging.c

+/*
+ * Copyright (C) 2013 University of Chicago.
+ * See COPYRIGHT notice in top-level directory.
+ *
+ */
+
 /*
  * (C) 2001 Clemson University and The University of Chicago
  *

src/logging/timeline.c

 /*
- * Copyright (C) 2012, University of Chicago
- *
+ * Copyright (C) 2013 University of Chicago.
  * See COPYRIGHT notice in top-level directory.
+ *
  */
 
 /*
@@ -86,3 +86,12 @@ void timeline_finalize()
 }
 
 #endif
+
+/*
+ * Local variables:
+ *  c-indent-level: 4
+ *  c-basic-offset: 4
+ * End:
+ *
+ * vim: ts=8 sts=4 sw=4 expandtab
+ */

src/modelconfig/configfile.c

+/*
+ * Copyright (C) 2013 University of Chicago.
+ * See COPYRIGHT notice in top-level directory.
+ *
+ */
+
 #include "codes_base_config.h"
 #include <string.h>
 #include <stdio.h>
@@ -173,3 +179,12 @@ int cf_dump (ConfigHandle cf, SectionHandle h, char ** err)
 {
    return txtfile_writeConfig (cf, h, stdout, err);
 }
+
+/*
+ * Local variables:
+ *  c-indent-level: 4
+ *  c-basic-offset: 4
+ * End:
+ *
+ * vim: ts=8 sts=4 sw=4 expandtab
+ */

src/modelconfig/configglue.c

+/*
+ * Copyright (C) 2013 University of Chicago.
+ * See COPYRIGHT notice in top-level directory.
+ *
+ */
+
 #include <stdio.h>
 #include <string.h>
 #include "configglue.h"
@@ -77,3 +83,12 @@ int cfgp_parse_ok (const ParserParams * p, char * buf, int bufsize)
    }
    return 1;
 }
+
+/*
+ * Local variables:
+ *  c-indent-level: 4
+ *  c-basic-offset: 4
+ * End:
+ *
+ * vim: ts=8 sts=4 sw=4 expandtab
+ */

src/modelconfig/configglue.h

+/*
+ * Copyright (C) 2013 University of Chicago.
+ * See COPYRIGHT notice in top-level directory.
+ *
+ */
+
 #ifndef SRC_COMMON_MODELCONFIG_CONFIGGLUE_H
 #define SRC_COMMON_MODELCONFIG_CONFIGGLUE_H
 
@@ -45,3 +51,12 @@ int cfgp_lex_error (ParserParams * p, int lineno, int colno, const char * msg);
 int cfgp_parse_ok (const ParserParams * p, char * buf, int bufsize);
 
 #endif
+
+/*
+ * Local variables:
+ *  c-indent-level: 4
+ *  c-basic-offset: 4
+ * End:
+ *
+ * vim: ts=8 sts=4 sw=4 expandtab
+ */

src/modelconfig/configstore.c

+/*
+ * Copyright (C) 2013 University of Chicago.
+ * See COPYRIGHT notice in top-level directory.
+ *
+ */
+
 #include "codes_base_config.h"
 #include <string.h>
 #include <assert.h>
@@ -352,3 +358,12 @@ int mcs_listsection (const mcs_entry * e, mcs_section_entry * out, unsigned int
    }
    return i;
 }
+
+/*
+ * Local variables:
+ *  c-indent-level: 4
+ *  c-basic-offset: 4
+ * End:
+ *
+ * vim: ts=8 sts=4 sw=4 expandtab
+ */

src/modelconfig/configstore.h

+/*
+ * Copyright (C) 2013 University of Chicago.
+ * See COPYRIGHT notice in top-level directory.
+ *
+ */
+
 #ifndef SRC_COMMON_MODELCONFIG_CONFIGSTORE_H
 #define SRC_COMMON_MODELCONFIG_CONFIGSTORE_H
 
@@ -85,3 +91,12 @@ int mcs_listsection (const mcs_entry * a, mcs_section_entry * e, unsigned int
 
 
 #endif
+
+/*
+ * Local variables:
+ *  c-indent-level: 4
+ *  c-basic-offset: 4
+ * End:
+ *
+ * vim: ts=8 sts=4 sw=4 expandtab
+ */

src/modelconfig/configstoreadapter.c

+/*
+ * Copyright (C) 2013 University of Chicago.
+ * See COPYRIGHT notice in top-level directory.
+ *
+ */
+
 #include "codes_base_config.h"
 #include <assert.h>
 #ifdef HAVE_MALLOC_H
@@ -221,3 +227,12 @@ ConfigHandle cfsa_create_empty ()
 {
    return cfsa_create (mcs_initroot ());
 }
+
+/*
+ * Local variables:
+ *  c-indent-level: 4
+ *  c-basic-offset: 4
+ * End:
+ *
+ * vim: ts=8 sts=4 sw=4 expandtab
+ */

src/modelconfig/configstoreadapter.h

+/*
+ * Copyright (C) 2013 University of Chicago.
+ * See COPYRIGHT notice in top-level directory.
+ *
+ */
+
 #ifndef SRC_COMMON_MODELCONFIG_CONFIGSTOREADAPTER_H
 #define SRC_COMMON_MODELCONFIG_CONFIGSTOREADAPTER_H
 
@@ -18,3 +24,12 @@ ConfigHandle cfsa_create_empty ();
 #endif
 
 #endif
+
+/*
+ * Local variables:
+ *  c-indent-level: 4
+ *  c-basic-offset: 4
+ * End:
+ *
+ * vim: ts=8 sts=4 sw=4 expandtab
+ */

src/modelconfig/txt_configfile.c

+/*
+ * Copyright (C) 2013 University of Chicago.
+ * See COPYRIGHT notice in top-level directory.
+ *
+ */
+
 #include <assert.h>
 #include <stdio.h>
 #include "codes/txt_configfile.h"
@@ -218,3 +224,12 @@ ConfigHandle txtfile_openConfig (const char * filename, char ** error)
    return ret;
 }
 
+
+/*
+ * Local variables:
+ *  c-indent-level: 4
+ *  c-basic-offset: 4
+ * End:
+ *
+ * vim: ts=8 sts=4 sw=4 expandtab
+ */

src/util/codes-callbacks.c

+/*
+ * Copyright (C) 2013 University of Chicago.
+ * See COPYRIGHT notice in top-level directory.
+ *
+ */
+
 #include "util/codes-callbacks.h"
 
 int codes_callback_create(uint64_t srclp, uint64_t event, uint64_t reqid, 
@@ -58,3 +64,12 @@ int codes_callback_copy(codes_callback_t * dest, codes_callback_t * src)
 
     return 0;
 }
+
+/*
+ * Local variables:
+ *  c-indent-level: 4
+ *  c-basic-offset: 4
+ * End:
+ *
+ * vim: ts=8 sts=4 sw=4 expandtab
+ */

src/util/codes-callbacks.h

+/*
+ * Copyright (C) 2013 University of Chicago.
+ * See COPYRIGHT notice in top-level directory.
+ *
+ */
+
 #ifndef CODES_CALLBACKS_H
 #define CODES_CALLBACKS_H
 
@@ -22,3 +28,12 @@ int codes_callback_invoke(codes_callback_t * cb, tw_lp * lp);
 int codes_callback_copy(codes_callback_t * dest, codes_callback_t * src);
 
 #endif
+
+/*
+ * Local variables:
+ *  c-indent-level: 4
+ *  c-basic-offset: 4
+ * End:
+ *
+ * vim: ts=8 sts=4 sw=4 expandtab
+ */

src/util/codes_mapping.c

 /*
- * Copyright (C) 2011, University of Chicago
- *
+ * Copyright (C) 2013 University of Chicago.
  * See COPYRIGHT notice in top-level directory.
+ *
  */
 
 /* SUMMARY:
@@ -240,3 +240,12 @@ void codes_mapping_setup()
   tw_define_lps(codes_mapping_get_lps_for_pe(), message_size, 0);
 }
 
+
+/*
+ * Local variables:
+ *  c-indent-level: 4
+ *  c-basic-offset: 4
+ * End:
+ *
+ * vim: ts=8 sts=4 sw=4 expandtab
+ */

src/util/configuration.c

+/*
+ * Copyright (C) 2013 University of Chicago.
+ * See COPYRIGHT notice in top-level directory.
+ *
+ */
+
 #include <stdio.h>
 #include <stdlib.h>
 #include <string.h>
@@ -236,3 +242,12 @@ int configuration_get_lpgroups (ConfigHandle *handle,
     
     return 0;
 }
+
+/*
+ * Local variables:
+ *  c-indent-level: 4
+ *  c-basic-offset: 4
+ * End:
+ *
+ * vim: ts=8 sts=4 sw=4 expandtab
+ */

src/util/lookup3.c

+/*
+ * Copyright (C) 2013 University of Chicago.
+ * See COPYRIGHT notice in top-level directory.
+ *
+ */
+
 #include "codes_base_config.h"
 #include "codes/jenkins-hash.h"
 
@@ -346,3 +352,12 @@ void bj_hashlittle2(
   *pc=c; *pb=b;
 }
 
+
+/*
+ * Local variables:
+ *  c-indent-level: 4
+ *  c-basic-offset: 4
+ * End:
+ *
+ * vim: ts=8 sts=4 sw=4 expandtab
+ */

src/util/lp-io.c

 /*
- * Copyright (C) 2011, University of Chicago
- *
+ * Copyright (C) 2013 University of Chicago.
  * See COPYRIGHT notice in top-level directory.
+ *
  */
 
 #include <assert.h>

src/util/lp-type-lookup.c

 /*
- * Copyright (C) 2013, University of Chicago
- *
+ * Copyright (C) 2013 University of Chicago.
  * See COPYRIGHT notice in top-level directory.
+ *
  */