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Francois Tessier
TAPIOCA
Commits
109885b6
Commit
109885b6
authored
Apr 24, 2017
by
Francois Tessier
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User-defined number of particles per rank for HACC-IO
parent
8bab99f2
Changes
5
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5 changed files
with
49 additions
and
19 deletions
+49
-19
examples/HACC-IO/miniHACC-AoS-MPIIO.cpp
examples/HACC-IO/miniHACC-AoS-MPIIO.cpp
+3
-1
examples/HACC-IO/miniHACC-AoS.cpp
examples/HACC-IO/miniHACC-AoS.cpp
+5
-3
examples/HACC-IO/miniHACC-SoA-MPIIO.cpp
examples/HACC-IO/miniHACC-SoA-MPIIO.cpp
+3
-1
examples/HACC-IO/miniHACC-SoA.cpp
examples/HACC-IO/miniHACC-SoA.cpp
+3
-1
examples/HACC-IO/run_check_xc40.sh
examples/HACC-IO/run_check_xc40.sh
+35
-13
No files found.
examples/HACC-IO/miniHACC-AoS-MPIIO.cpp
View file @
109885b6
...
@@ -14,7 +14,7 @@
...
@@ -14,7 +14,7 @@
int
main
(
int
argc
,
char
*
argv
[])
int
main
(
int
argc
,
char
*
argv
[])
{
{
int
world_numtasks
,
world_myrank
,
mycolor
,
mykey
,
sub_numtasks
,
sub_myrank
,
file_id
;
int
world_numtasks
,
world_myrank
,
mycolor
,
mykey
,
sub_numtasks
,
sub_myrank
,
file_id
;
int64_t
num_particles
=
25000
;
int64_t
num_particles
;
int64_t
sub_particles
,
tot_particles
,
particle_size
,
file_size
,
tot_size
;
int64_t
sub_particles
,
tot_particles
,
particle_size
,
file_size
,
tot_size
;
int64_t
scan_size
=
0
,
offset
;
int64_t
scan_size
=
0
,
offset
;
double
start_time
,
end_time
,
tot_time
,
max_time
;
double
start_time
,
end_time
,
tot_time
,
max_time
;
...
@@ -36,6 +36,8 @@ int main (int argc, char * argv[])
...
@@ -36,6 +36,8 @@ int main (int argc, char * argv[])
MPI_Comm_size
(
sub_comm
,
&
sub_numtasks
);
MPI_Comm_size
(
sub_comm
,
&
sub_numtasks
);
MPI_Comm_rank
(
sub_comm
,
&
sub_myrank
);
MPI_Comm_rank
(
sub_comm
,
&
sub_myrank
);
num_particles
=
atoi
(
argv
[
1
]
);
file_id
=
0
;
file_id
=
0
;
if
(
argv
[
1
]
!=
NULL
)
if
(
argv
[
1
]
!=
NULL
)
file_id
=
atoi
(
argv
[
1
]
);
file_id
=
atoi
(
argv
[
1
]
);
...
...
examples/HACC-IO/miniHACC-AoS.cpp
View file @
109885b6
...
@@ -14,7 +14,7 @@
...
@@ -14,7 +14,7 @@
int
main
(
int
argc
,
char
*
argv
[])
int
main
(
int
argc
,
char
*
argv
[])
{
{
int
world_numtasks
,
world_myrank
,
mycolor
,
mykey
,
sub_numtasks
,
sub_myrank
,
i
,
file_id
;
int
world_numtasks
,
world_myrank
,
mycolor
,
mykey
,
sub_numtasks
,
sub_myrank
,
i
,
file_id
;
int64_t
num_particles
=
25000
;
int64_t
num_particles
;
int64_t
sub_particles
,
tot_particles
,
particle_size
,
file_size
,
tot_size
;
int64_t
sub_particles
,
tot_particles
,
particle_size
,
file_size
,
tot_size
;
int64_t
scan_size
=
0
,
offset
,
hdr
=
0
;
int64_t
scan_size
=
0
,
offset
,
hdr
=
0
;
double
start_time
,
end_time
,
tot_time
,
max_time
;
double
start_time
,
end_time
,
tot_time
,
max_time
;
...
@@ -38,9 +38,11 @@ int main (int argc, char * argv[])
...
@@ -38,9 +38,11 @@ int main (int argc, char * argv[])
MPI_Comm_size
(
sub_comm
,
&
sub_numtasks
);
MPI_Comm_size
(
sub_comm
,
&
sub_numtasks
);
MPI_Comm_rank
(
sub_comm
,
&
sub_myrank
);
MPI_Comm_rank
(
sub_comm
,
&
sub_myrank
);
num_particles
=
atoi
(
argv
[
1
]
);
file_id
=
0
;
file_id
=
0
;
if
(
argv
[
1
]
!=
NULL
)
if
(
argv
[
2
]
!=
NULL
)
file_id
=
atoi
(
argv
[
1
]
);
file_id
=
atoi
(
argv
[
2
]
);
#ifdef BGQ
#ifdef BGQ
snprintf
(
output
,
100
,
"/projects/visualization/ftessier/debug/HACC-SOA-%08d-%d.dat"
,
mycolor
,
file_id
);
snprintf
(
output
,
100
,
"/projects/visualization/ftessier/debug/HACC-SOA-%08d-%d.dat"
,
mycolor
,
file_id
);
...
...
examples/HACC-IO/miniHACC-SoA-MPIIO.cpp
View file @
109885b6
...
@@ -14,7 +14,7 @@
...
@@ -14,7 +14,7 @@
int
main
(
int
argc
,
char
*
argv
[])
int
main
(
int
argc
,
char
*
argv
[])
{
{
int
world_numtasks
,
world_myrank
,
mycolor
,
mykey
,
sub_numtasks
,
sub_myrank
,
file_id
;
int
world_numtasks
,
world_myrank
,
mycolor
,
mykey
,
sub_numtasks
,
sub_myrank
,
file_id
;
int64_t
num_particles
=
25000
;
int64_t
num_particles
;
int64_t
sub_particles
,
tot_particles
,
particle_size
,
file_size
,
tot_size
;
int64_t
sub_particles
,
tot_particles
,
particle_size
,
file_size
,
tot_size
;
int64_t
scan_size
=
0
,
offset
;
int64_t
scan_size
=
0
,
offset
;
double
start_time
,
end_time
,
tot_time
,
max_time
;
double
start_time
,
end_time
,
tot_time
,
max_time
;
...
@@ -36,6 +36,8 @@ int main (int argc, char * argv[])
...
@@ -36,6 +36,8 @@ int main (int argc, char * argv[])
MPI_Comm_size
(
sub_comm
,
&
sub_numtasks
);
MPI_Comm_size
(
sub_comm
,
&
sub_numtasks
);
MPI_Comm_rank
(
sub_comm
,
&
sub_myrank
);
MPI_Comm_rank
(
sub_comm
,
&
sub_myrank
);
num_particles
=
atoi
(
argv
[
1
]
);
file_id
=
0
;
file_id
=
0
;
if
(
argv
[
1
]
!=
NULL
)
if
(
argv
[
1
]
!=
NULL
)
file_id
=
atoi
(
argv
[
1
]
);
file_id
=
atoi
(
argv
[
1
]
);
...
...
examples/HACC-IO/miniHACC-SoA.cpp
View file @
109885b6
...
@@ -14,7 +14,7 @@
...
@@ -14,7 +14,7 @@
int
main
(
int
argc
,
char
*
argv
[])
int
main
(
int
argc
,
char
*
argv
[])
{
{
int
world_numtasks
,
world_myrank
,
mycolor
,
mykey
,
sub_numtasks
,
sub_myrank
,
i
,
file_id
;
int
world_numtasks
,
world_myrank
,
mycolor
,
mykey
,
sub_numtasks
,
sub_myrank
,
i
,
file_id
;
int64_t
num_particles
=
25000
;
int64_t
num_particles
;
int64_t
sub_particles
,
tot_particles
,
particle_size
,
file_size
,
tot_size
;
int64_t
sub_particles
,
tot_particles
,
particle_size
,
file_size
,
tot_size
;
int64_t
scan_size
=
0
,
offset
,
hdr
=
0
;
int64_t
scan_size
=
0
,
offset
,
hdr
=
0
;
double
start_time
,
end_time
,
tot_time
,
max_time
;
double
start_time
,
end_time
,
tot_time
,
max_time
;
...
@@ -38,6 +38,8 @@ int main (int argc, char * argv[])
...
@@ -38,6 +38,8 @@ int main (int argc, char * argv[])
MPI_Comm_size
(
sub_comm
,
&
sub_numtasks
);
MPI_Comm_size
(
sub_comm
,
&
sub_numtasks
);
MPI_Comm_rank
(
sub_comm
,
&
sub_myrank
);
MPI_Comm_rank
(
sub_comm
,
&
sub_myrank
);
num_particles
=
atoi
(
argv
[
1
]
);
file_id
=
0
;
file_id
=
0
;
if
(
argv
[
1
]
!=
NULL
)
if
(
argv
[
1
]
!=
NULL
)
file_id
=
atoi
(
argv
[
1
]
);
file_id
=
atoi
(
argv
[
1
]
);
...
...
examples/HACC-IO/run_check_xc40.sh
View file @
109885b6
#!/bin/bash
#!/bin/bash
VARS
=
"-e MPICH_RMA_OVER_DMAPP=1 -e MPICH_MPIIO_AGGREGATOR_PLACEMENT_DISPLAY=1 -e MPICH_MPIIO_HINTS=*:cray_cb_nodes_multiplier=8"
NODES
=
1024
NODES
=
64
PPN
=
16
PPN
=
16
NPROCS
=
$((
NODES
*
PPN
))
NPROCS
=
$((
NODES
*
PPN
))
TARGET
=
"/lus/theta-fs0/projects/Performance/ftessier/HACC"
TARGET
=
"/lus/theta-fs0/projects/Performance/ftessier/HACC"
DDT
=
"/soft/debuggers/forge/bin/ddt --connect"
DDT
=
"/soft/debuggers/forge/bin/ddt --connect"
STRIPE_COUNT
=
48
STRIPE_SIZE
=
8388608
cd
$HOME
/TAPIOCA/examples/HACC-IO
cd
$HOME
/TAPIOCA/examples/HACC-IO
export
TAPIOCA_DEVNULL
=
false
export
TAPIOCA_DEVNULL
=
false
export
TAPIOCA_COMMSPLIT
=
true
export
TAPIOCA_COMMSPLIT
=
true
export
TAPIOCA_STRATEGY
=
TOPOLOGY_AWARE
export
TAPIOCA_STRATEGY
=
TOPOLOGY_AWARE
export
TAPIOCA_NBAGGR
=
8
export
TAPIOCA_NBAGGR
=
64
#export TAPIOCA_BUFFERSIZE=2097152
#export TAPIOCA_BUFFERSIZE=2097152
#export TAPIOCA_BUFFERSIZE=4194304
#export TAPIOCA_BUFFERSIZE=4194304
#export TAPIOCA_BUFFERSIZE=8388608
#export TAPIOCA_BUFFERSIZE=8388608
export
TAPIOCA_BUFFERSIZE
=
16777216
export
TAPIOCA_BUFFERSIZE
=
16777216
#export TAPIOCA_BUFFERSIZE=33554432
VARS
=
"-e MPICH_RMA_OVER_DMAPP=1 -e MPICH_MPIIO_AGGREGATOR_PLACEMENT_DISPLAY=1 -e MPICH_MPIIO_HINTS=*:cray_cb_nodes_multiplier=1"
function
setLustreFS
()
{
rm
$TARGET
/
*
lfs setstripe
--stripe-count
$STRIPE_COUNT
--stripe-size
$STRIPE_SIZE
$TARGET
lfs getstripe
$TARGET
}
function
updateSettings
()
function
updateSettings
()
{
{
...
@@ -30,17 +41,28 @@ function updateSettings()
...
@@ -30,17 +41,28 @@ function updateSettings()
SETTINGS
=
"
$SETTINGS
-e MPICH_RMA_OVER_DMAPP=1"
SETTINGS
=
"
$SETTINGS
-e MPICH_RMA_OVER_DMAPP=1"
}
}
for
PARTICLES
in
5000 15000 25000 35000 50000
do
updateSettings
setLustreFS
rm
$TARGET
/
*
aprun
$VARS
$SETTINGS
-n
$NPROCS
-N
$PPN
./miniHACC-AoS
$PARTICLES
1
sleep
5
rm
$TARGET
/
*
aprun
$VARS
$SETTINGS
-n
$NPROCS
-N
$PPN
./miniHACC-AoS-MPIIO
$PARTICLES
1
sleep
5
rm
$TARGET
/
*
aprun
$VARS
$SETTINGS
-n
$NPROCS
-N
$PPN
./miniHACC-SoA
$PARTICLES
1
sleep
5
rm
$TARGET
/
*
aprun
$VARS
$SETTINGS
-n
$NPROCS
-N
$PPN
./miniHACC-SoA-MPIIO
$PARTICLES
1
sleep
5
done
rm
$TARGET
/
*
updateSettings
aprun
$VARS
$SETTINGS
-n
$NPROCS
-N
$PPN
./miniHACC-AoS 1
sleep
5
aprun
$VARS
$SETTINGS
-n
$NPROCS
-N
$PPN
./miniHACC-AoS-MPIIO 1
sleep
5
aprun
$VARS
$SETTINGS
-n
$NPROCS
-N
$PPN
./miniHACC-SoA 1
sleep
5
aprun
$VARS
$SETTINGS
-n
$NPROCS
-N
$PPN
./miniHACC-SoA-MPIIO 1
#########################
#########################
# Array of Structures
# Array of Structures
#########################
#########################
...
...
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