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Francois Tessier
TAPIOCA
Commits
ddc1891d
Commit
ddc1891d
authored
Jun 20, 2017
by
Francois Tessier
Browse files
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Plain Diff
Reset variables on Write/Read initialization. One TAPIOCA object needed for all the I/O calls.
parent
3c412044
Changes
7
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Showing
7 changed files
with
32 additions
and
30 deletions
+32
-30
examples/1D-Array/main_tapioca.cpp
examples/1D-Array/main_tapioca.cpp
+3
-3
examples/HACC-IO/miniHACC-AoS.cpp
examples/HACC-IO/miniHACC-AoS.cpp
+10
-11
examples/HACC-IO/miniHACC-SoA.cpp
examples/HACC-IO/miniHACC-SoA.cpp
+10
-11
examples/HACC-IO/run_check_bgq.sh
examples/HACC-IO/run_check_bgq.sh
+2
-2
tapioca.cpp
tapioca.cpp
+0
-2
tp_read.cpp
tp_read.cpp
+4
-1
tp_write.cpp
tp_write.cpp
+3
-0
No files found.
examples/1D-Array/main_tapioca.cpp
View file @
ddc1891d
...
...
@@ -32,7 +32,7 @@ int main (int argc, char * argv[])
MPI_File
file_handle
;
MPI_Status
status
;
char
output
[
100
];
Tapioca
tp
,
tp2
;
Tapioca
tp
;
int64_t
chunkCount
[
1
],
chunkOffset
[
1
];
int
chunkSize
[
1
];
...
...
@@ -138,7 +138,7 @@ int main (int argc, char * argv[])
/*****************/
/* INIT TAPIOCA */
/*****************/
tp
2
.
ReadInitialize
(
output
,
chunkCount
,
chunkSize
,
chunkOffset
,
1
,
hdr
,
ARRAY_OF_STRUCTURES
,
sub_comm
);
tp
.
ReadInitialize
(
output
,
chunkCount
,
chunkSize
,
chunkOffset
,
1
,
hdr
,
ARRAY_OF_STRUCTURES
,
sub_comm
);
/*****************/
start_time
=
MPI_Wtime
();
...
...
@@ -151,7 +151,7 @@ int main (int argc, char * argv[])
offset
=
scan_size
*
particle_size
;
tp
2
.
Read
(
file_handle
,
offset
,
xx_r
,
num_particles
,
MPI_FLOAT
,
&
status
);
tp
.
Read
(
file_handle
,
offset
,
xx_r
,
num_particles
,
MPI_FLOAT
,
&
status
);
MPI_File_close
(
&
file_handle
);
...
...
examples/HACC-IO/miniHACC-AoS.cpp
View file @
ddc1891d
...
...
@@ -24,7 +24,6 @@ int main (int argc, char * argv[])
MPI_Status
status
;
char
output
[
100
];
Tapioca
tp
;
Tapioca
tp2
;
int64_t
chunkCount
[
9
],
chunkOffset
[
9
];
int
chunkSize
[
9
];
...
...
@@ -202,7 +201,7 @@ int main (int argc, char * argv[])
/*****************/
/* INIT TAPIOCA */
/*****************/
tp
2
.
ReadInitialize
(
output
,
chunkCount
,
chunkSize
,
chunkOffset
,
9
,
hdr
,
ARRAY_OF_STRUCTURES
,
sub_comm
);
tp
.
ReadInitialize
(
output
,
chunkCount
,
chunkSize
,
chunkOffset
,
9
,
hdr
,
ARRAY_OF_STRUCTURES
,
sub_comm
);
/*****************/
start_time
=
MPI_Wtime
();
...
...
@@ -215,31 +214,31 @@ int main (int argc, char * argv[])
offset
=
scan_size
*
particle_size
;
tp
2
.
Read
(
file_handle
,
offset
,
xx_r
,
num_particles
,
MPI_FLOAT
,
&
status
);
tp
.
Read
(
file_handle
,
offset
,
xx_r
,
num_particles
,
MPI_FLOAT
,
&
status
);
offset
+=
num_particles
*
sizeof
(
float
);
tp
2
.
Read
(
file_handle
,
offset
,
yy_r
,
num_particles
,
MPI_FLOAT
,
&
status
);
tp
.
Read
(
file_handle
,
offset
,
yy_r
,
num_particles
,
MPI_FLOAT
,
&
status
);
offset
+=
num_particles
*
sizeof
(
float
);
tp
2
.
Read
(
file_handle
,
offset
,
zz_r
,
num_particles
,
MPI_FLOAT
,
&
status
);
tp
.
Read
(
file_handle
,
offset
,
zz_r
,
num_particles
,
MPI_FLOAT
,
&
status
);
offset
+=
num_particles
*
sizeof
(
float
);
tp
2
.
Read
(
file_handle
,
offset
,
vx_r
,
num_particles
,
MPI_FLOAT
,
&
status
);
tp
.
Read
(
file_handle
,
offset
,
vx_r
,
num_particles
,
MPI_FLOAT
,
&
status
);
offset
+=
num_particles
*
sizeof
(
float
);
tp
2
.
Read
(
file_handle
,
offset
,
vy_r
,
num_particles
,
MPI_FLOAT
,
&
status
);
tp
.
Read
(
file_handle
,
offset
,
vy_r
,
num_particles
,
MPI_FLOAT
,
&
status
);
offset
+=
num_particles
*
sizeof
(
float
);
tp
2
.
Read
(
file_handle
,
offset
,
vz_r
,
num_particles
,
MPI_FLOAT
,
&
status
);
tp
.
Read
(
file_handle
,
offset
,
vz_r
,
num_particles
,
MPI_FLOAT
,
&
status
);
offset
+=
num_particles
*
sizeof
(
float
);
tp
2
.
Read
(
file_handle
,
offset
,
phi_r
,
num_particles
,
MPI_FLOAT
,
&
status
);
tp
.
Read
(
file_handle
,
offset
,
phi_r
,
num_particles
,
MPI_FLOAT
,
&
status
);
offset
+=
num_particles
*
sizeof
(
float
);
tp
2
.
Read
(
file_handle
,
offset
,
pid_r
,
num_particles
,
MPI_LONG_LONG
,
&
status
);
tp
.
Read
(
file_handle
,
offset
,
pid_r
,
num_particles
,
MPI_LONG_LONG
,
&
status
);
offset
+=
num_particles
*
sizeof
(
int64_t
);
tp
2
.
Read
(
file_handle
,
offset
,
mask_r
,
num_particles
,
MPI_UNSIGNED_SHORT
,
&
status
);
tp
.
Read
(
file_handle
,
offset
,
mask_r
,
num_particles
,
MPI_UNSIGNED_SHORT
,
&
status
);
MPI_File_close
(
&
file_handle
);
...
...
examples/HACC-IO/miniHACC-SoA.cpp
View file @
ddc1891d
...
...
@@ -24,7 +24,6 @@ int main (int argc, char * argv[])
MPI_Status
status
;
char
output
[
100
];
Tapioca
tp
;
Tapioca
tp2
;
int64_t
chunkCount
[
9
],
chunkOffset
[
9
];
int
chunkSize
[
9
];
...
...
@@ -202,7 +201,7 @@ int main (int argc, char * argv[])
/*****************/
/* INIT TAPIOCA */
/*****************/
tp
2
.
ReadInitialize
(
output
,
chunkCount
,
chunkSize
,
chunkOffset
,
9
,
hdr
,
ARRAY_OF_STRUCTURES
,
sub_comm
);
tp
.
ReadInitialize
(
output
,
chunkCount
,
chunkSize
,
chunkOffset
,
9
,
hdr
,
ARRAY_OF_STRUCTURES
,
sub_comm
);
/*****************/
start_time
=
MPI_Wtime
();
...
...
@@ -215,31 +214,31 @@ int main (int argc, char * argv[])
offset
=
scan_size
*
sizeof
(
float
);
tp
2
.
Read
(
file_handle
,
offset
,
xx_r
,
num_particles
,
MPI_FLOAT
,
&
status
);
tp
.
Read
(
file_handle
,
offset
,
xx_r
,
num_particles
,
MPI_FLOAT
,
&
status
);
offset
+=
(
sub_particles
-
scan_size
)
*
sizeof
(
float
)
+
scan_size
*
sizeof
(
float
);
tp
2
.
Read
(
file_handle
,
offset
,
yy_r
,
num_particles
,
MPI_FLOAT
,
&
status
);
tp
.
Read
(
file_handle
,
offset
,
yy_r
,
num_particles
,
MPI_FLOAT
,
&
status
);
offset
+=
(
sub_particles
-
scan_size
)
*
sizeof
(
float
)
+
scan_size
*
sizeof
(
float
);
tp
2
.
Read
(
file_handle
,
offset
,
zz_r
,
num_particles
,
MPI_FLOAT
,
&
status
);
tp
.
Read
(
file_handle
,
offset
,
zz_r
,
num_particles
,
MPI_FLOAT
,
&
status
);
offset
+=
(
sub_particles
-
scan_size
)
*
sizeof
(
float
)
+
scan_size
*
sizeof
(
float
);
tp
2
.
Read
(
file_handle
,
offset
,
vx_r
,
num_particles
,
MPI_FLOAT
,
&
status
);
tp
.
Read
(
file_handle
,
offset
,
vx_r
,
num_particles
,
MPI_FLOAT
,
&
status
);
offset
+=
(
sub_particles
-
scan_size
)
*
sizeof
(
float
)
+
scan_size
*
sizeof
(
float
);
tp
2
.
Read
(
file_handle
,
offset
,
vy_r
,
num_particles
,
MPI_FLOAT
,
&
status
);
tp
.
Read
(
file_handle
,
offset
,
vy_r
,
num_particles
,
MPI_FLOAT
,
&
status
);
offset
+=
(
sub_particles
-
scan_size
)
*
sizeof
(
float
)
+
scan_size
*
sizeof
(
float
);
tp
2
.
Read
(
file_handle
,
offset
,
vz_r
,
num_particles
,
MPI_FLOAT
,
&
status
);
tp
.
Read
(
file_handle
,
offset
,
vz_r
,
num_particles
,
MPI_FLOAT
,
&
status
);
offset
+=
(
sub_particles
-
scan_size
)
*
sizeof
(
float
)
+
scan_size
*
sizeof
(
float
);
tp
2
.
Read
(
file_handle
,
offset
,
phi_r
,
num_particles
,
MPI_FLOAT
,
&
status
);
tp
.
Read
(
file_handle
,
offset
,
phi_r
,
num_particles
,
MPI_FLOAT
,
&
status
);
offset
+=
(
sub_particles
-
scan_size
)
*
sizeof
(
float
)
+
scan_size
*
sizeof
(
int64_t
);
tp
2
.
Read
(
file_handle
,
offset
,
pid_r
,
num_particles
,
MPI_LONG_LONG
,
&
status
);
tp
.
Read
(
file_handle
,
offset
,
pid_r
,
num_particles
,
MPI_LONG_LONG
,
&
status
);
offset
+=
(
sub_particles
-
scan_size
)
*
sizeof
(
int64_t
)
+
scan_size
*
sizeof
(
uint16_t
);
tp
2
.
Read
(
file_handle
,
offset
,
mask_r
,
num_particles
,
MPI_UNSIGNED_SHORT
,
&
status
);
tp
.
Read
(
file_handle
,
offset
,
mask_r
,
num_particles
,
MPI_UNSIGNED_SHORT
,
&
status
);
MPI_File_close
(
&
file_handle
);
...
...
examples/HACC-IO/run_check_bgq.sh
View file @
ddc1891d
#!/bin/bash
NODES
=
102
4
NODES
=
6
4
PPN
=
16
NPROCS
=
$((
NODES
*
PPN
))
TARGET
=
"/projects/visualization/ftessier/debug"
...
...
@@ -31,7 +31,7 @@ function updateSettings()
SETTINGS
=
"
$SETTINGS
BGLOCKLESSMPIO_F_TYPE=0x47504653"
}
for
run
in
0
1 2
for
run
in
0
do
rm
$TARGET
/
*
updateSettings
...
...
tapioca.cpp
View file @
ddc1891d
...
...
@@ -2,8 +2,6 @@
Tapioca
::
Tapioca
()
{
this
->
SetDefaultValues
();
this
->
ParseEnvVariables
();
}
...
...
tp_read.cpp
View file @
ddc1891d
...
...
@@ -8,7 +8,10 @@ void Tapioca::ReadInitialize (char *filename, int64_t *chunkCount, int *chunkSiz
double
startInitTime
,
endInitTime
,
startElectTime
,
endElectTime
;
startInitTime
=
MPI_Wtime
();
#endif
this
->
SetDefaultValues
();
this
->
ParseEnvVariables
();
this
->
filename_
=
filename
;
this
->
nChunks_
=
nChunks
;
this
->
chunksIndexMatching
.
resize
(
this
->
nChunks_
);
...
...
tp_write.cpp
View file @
ddc1891d
...
...
@@ -8,6 +8,9 @@ void Tapioca::WriteInitialize (char *filename, int64_t *chunkCount, int *chunkSi
double
startInitTime
,
endInitTime
,
startElectTime
,
endElectTime
;
startInitTime
=
MPI_Wtime
();
#endif
this
->
SetDefaultValues
();
this
->
ParseEnvVariables
();
this
->
filename_
=
filename
;
this
->
nChunks_
=
nChunks
;
...
...
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