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Francois Tessier
TAPIOCA
Commits
ae8bc5fc
Commit
ae8bc5fc
authored
Jan 20, 2017
by
Francois Tessier
Browse files
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Bug fix in examples. Interface for Cray X40
parent
c17b9640
Changes
7
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7 changed files
with
76 additions
and
25 deletions
+76
-25
.gitignore
.gitignore
+3
-1
examples/Makefile
examples/Makefile
+12
-11
examples/miniHACC-AoS.cpp
examples/miniHACC-AoS.cpp
+1
-0
examples/miniHACC-SoA.cpp
examples/miniHACC-SoA.cpp
+1
-0
examples/run_check.sh
examples/run_check.sh
+6
-2
topology/cray_xc40_theta.hpp
topology/cray_xc40_theta.hpp
+51
-9
topology/topology.hpp
topology/topology.hpp
+2
-2
No files found.
.gitignore
View file @
ae8bc5fc
...
...
@@ -4,4 +4,6 @@
*.error
*.output
miniHACC-AoS
miniHACC-SoA
\ No newline at end of file
miniHACC-SoA
miniHACC-AoS-MPIIO
miniHACC-SoA-MPIIO
\ No newline at end of file
examples/Makefile
View file @
ae8bc5fc
MPICC
=
mpicxx
MPI_CFLAGS
=
-g
-O3
-
Wall
-
I
/bgsys/drivers/ppcfloor
-I
/bgsys/drivers/ppcfloor/spi/include/kernel/cnk
-I
${HOME}
/install_bgq/include/
-DBGQ
MPI_CFLAGS
=
-g
-O3
-I
/bgsys/drivers/ppcfloor
-I
/bgsys/drivers/ppcfloor/spi/include/kernel/cnk
-I
${HOME}
/install_bgq/include/
-DBGQ
MPI_LDFLAGS
=
-lstdc
++
-lpthread
-lm
-L
${HOME}
/install_bgq/lib/
-ltapioca
all
:
miniHACC-AoS miniHACC-SoA
all
:
miniHACC-AoS miniHACC-SoA
miniHACC-AoS-MPIIO miniHACC-SoA-MPIIO
miniHACC-AoS
:
miniHACC-AoS.
o
$(MPICC)
$(MPI_CFLAGS)
miniHACC-AoS.o
-o
$@
$(MPI_LDFLAGS)
miniHACC-AoS
:
miniHACC-AoS.
cpp
$(MPICC)
$(MPI_CFLAGS)
$?
-o
$@
$(MPI_LDFLAGS)
miniHACC-
AoS.o
:
miniHACC-AoS
.cpp
$(MPICC)
$(MPI_CFLAGS)
-c
miniHACC-AoS.cpp
miniHACC-
SoA
:
miniHACC-SoA
.cpp
$(MPICC)
$(MPI_CFLAGS)
$?
-o
$@
$(MPI_LDFLAGS)
miniHACC-SoA
:
miniHACC-SoA.o
$(MPICC)
$(MPI_CFLAGS)
miniHACC-SoA.o
-o
$@
$(MPI_LDFLAGS)
### MPI I/O
miniHACC-AoS-MPIIO
:
miniHACC-AoS-MPIIO.cpp
$(MPICC)
$(MPI_CFLAGS)
$?
-o
$@
$(MPI_LDFLAGS)
miniHACC-SoA
.o
:
miniHACC-SoA
.cpp
$(MPICC)
$(MPI_CFLAGS)
-c
miniHACC-SoA.cpp
miniHACC-SoA
-MPIIO
:
miniHACC-SoA-MPIIO
.cpp
$(MPICC)
$(MPI_CFLAGS)
$?
-o
$@
$(MPI_LDFLAGS)
clean
:
rm
miniHACC-AoS miniHACC-SoA
*
.o HACC.dat
rm
miniHACC-AoS miniHACC-SoA
miniHACC-AoS-MPIIO miniHACC-SoA-MPIIO
*
.o HACC.dat
examples/miniHACC-AoS.cpp
View file @
ae8bc5fc
...
...
@@ -87,6 +87,7 @@ int main (int argc, char * argv[])
MPI_Exscan
(
&
num_particles
,
&
scan_size
,
1
,
MPI_LONG_LONG
,
MPI_SUM
,
sub_comm
);
if
(
0
==
sub_myrank
)
{
fprintf
(
stdout
,
GREEN
"[INFO]"
RESET
" [%08d] miniHACC-AoS
\n
"
,
mycolor
);
fprintf
(
stdout
,
GREEN
"[INFO]"
RESET
" [%08d] Write output file (AoS data layout)
\n
"
,
mycolor
);
fprintf
(
stdout
,
GREEN
"[INFO]"
RESET
" [%08d] --> %lld particles per rank
\n
"
,
mycolor
,
num_particles
);
fprintf
(
stdout
,
GREEN
"[INFO]"
RESET
" [%08d] --> File size: %.2f MB (%lld particles)
\n
"
,
...
...
examples/miniHACC-SoA.cpp
View file @
ae8bc5fc
...
...
@@ -87,6 +87,7 @@ int main (int argc, char * argv[])
MPI_Exscan
(
&
num_particles
,
&
scan_size
,
1
,
MPI_LONG_LONG
,
MPI_SUM
,
sub_comm
);
if
(
0
==
sub_myrank
)
{
fprintf
(
stdout
,
GREEN
"[INFO]"
RESET
" [%08d] miniHACC-SoA
\n
"
,
mycolor
);
fprintf
(
stdout
,
GREEN
"[INFO]"
RESET
" [%08d] Write output file (SoA data layout)
\n
"
,
mycolor
);
fprintf
(
stdout
,
GREEN
"[INFO]"
RESET
" [%08d] --> %lld particles per rank
\n
"
,
mycolor
,
num_particles
);
fprintf
(
stdout
,
GREEN
"[INFO]"
RESET
" [%08d] --> File size: %.2f MB (%lld particles)
\n
"
,
...
...
examples/run_check.sh
View file @
ae8bc5fc
#!/bin/bash
VARS
=
"PAMID_VERBOSE=1 BG_SHAREDMEMSIZE=64 PAMID_COLLECTIVES=1 BGLOCKLESSMPIO_F_TYPE=0x47504653 PAMID_COLLECTIVES_MEMORY_OPTIMIZED=1"
NODES
=
256
NODES
=
512
PPN
=
16
NPROCS
=
$((
NODES
*
PPN
))
TARGET
=
"/projects/visualization/ftessier/debug"
...
...
@@ -17,7 +17,7 @@ export TAPIOCA_BUFFERSIZE=16777216
function
updateSettings
()
{
printenv
| egrep
"TAPIOCA_"
SETTINGS
=
"
$SETTINGS
TAPIOCA_DEVNULL=
$TAPIOCA_DEVNULL
"
SETTINGS
=
"TAPIOCA_DEVNULL=
$TAPIOCA_DEVNULL
"
SETTINGS
=
"
$SETTINGS
TAPIOCA_COMMSPLIT=
$TAPIOCA_COMMSPLIT
"
SETTINGS
=
"
$SETTINGS
TAPIOCA_STRATEGY=
$TAPIOCA_STRATEGY
"
SETTINGS
=
"
$SETTINGS
TAPIOCA_NBAGGR=
$TAPIOCA_NBAGGR
"
...
...
@@ -28,6 +28,7 @@ function updateSettings()
# Array of Structures
#########################
rm
$TARGET
/
*
updateSettings
runjob
--block
$COBALT_PARTNAME
--envs
$VARS
$SETTINGS
-p
$PPN
--np
$NPROCS
: ./miniHACC-AoS-MPIIO
sleep
4
let
j
=
0
...
...
@@ -39,6 +40,7 @@ do
done
rm
$TARGET
/
*
updateSettings
runjob
--block
$COBALT_PARTNAME
--envs
$VARS
$SETTINGS
-p
$PPN
--np
$NPROCS
: ./miniHACC-AoS
sleep
4
let
j
=
0
...
...
@@ -58,6 +60,7 @@ done
# Structure of Arrays
#########################
rm
$TARGET
/
*
updateSettings
runjob
--block
$COBALT_PARTNAME
--envs
$VARS
$SETTINGS
-p
$PPN
--np
$NPROCS
: ./miniHACC-SoA-MPIIO
sleep
4
let
j
=
0
...
...
@@ -69,6 +72,7 @@ do
done
rm
$TARGET
/
*
updateSettings
runjob
--block
$COBALT_PARTNAME
--envs
$VARS
$SETTINGS
-p
$PPN
--np
$NPROCS
: ./miniHACC-SoA
sleep
4
let
j
=
0
...
...
topology/cray_xc40_theta.hpp
View file @
ae8bc5fc
#ifndef
SAMPL
E_H
#define
SAMPL
E_H
#ifndef
CRAY_CX40_THETA_LUSTR
E_H
#define
CRAY_CX40_THETA_LUSTR
E_H
#include <stdio.h>
#include <stdlib.h>
...
...
@@ -7,32 +7,74 @@
class
Topology
:
public
iTopology
{
public:
int
NetworkDimensions
()
{
/**********************/
/* |-- Nodes */
/**********************/
int
IONodeId
()
{
return
0
;
}
int
RankToCoordinates
(
int
rank
,
int
*
coord
)
{
int
BridgeNodeId
()
{
return
0
;
}
int
IONodeId
()
{
int
ComputeNodeId
()
{
return
0
;
}
int
BridgeNodeId
()
{
int
ProcessPerNode
()
{
return
0
;
}
/**********************/
/* |-- Network */
/**********************/
int
NetworkDimensions
()
{
return
0
;
}
/* |---- Coordinates */
void
RankToCoordinates
(
int
rank
,
int
*
coord
)
{
}
void
IONodeCoordinates
(
int
*
coord
)
{
}
/* |---- Distance */
int
DistanceToIONode
()
{
return
0
;
}
int
Distance
ToRank
(
int
destRank
)
{
int
Distance
BetweenRanks
(
int
srcRank
,
int
destRank
)
{
return
0
;
}
int
ProcessPerNode
()
{
/* |---- Routes */
int
RouteToIONode
(
int
srcRank
,
int
*
path
)
{
return
0
;
}
int
RouteBetweenRanks
(
int
srcRank
,
int
destRank
,
int
*
path
)
{
return
0
;
}
/* |---- Links */
void
LinksList
(
int
*
linksList
)
{
}
};
#endif //
SAMPL
E_H
#endif //
CRAY_CX40_THETA_LUSTR
E_H
topology/topology.hpp
View file @
ae8bc5fc
...
...
@@ -9,10 +9,10 @@ class iTopology {
/**********************/
/* |-- Nodes */
/**********************/
virtual
int
ProcessPerNode
()
=
0
;
virtual
int
IONodeId
()
=
0
;
virtual
int
BridgeNodeId
()
=
0
;
// ComputeNodeId
virtual
int
ComputeNodeId
()
=
0
;
virtual
int
ProcessPerNode
()
=
0
;
/**********************/
/* |-- Network */
...
...
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