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Commit 76d33b22 authored by Philip Carns's avatar Philip Carns

Merge branch 'master' into dev-stdio-utils

parents 4ba7a24d 173d3d49
......@@ -144,6 +144,12 @@ void *darshan_core_register_record(
int rec_len,
struct darshan_fs_info *fs_info);
/* TODO */
void darshan_instrument_fs_data(
int fs_type,
const char *path,
int fd);
/* darshan_core_wtime()
*
* Returns the elapsed time relative to (roughly) the start of
......
......@@ -126,7 +126,11 @@ char* darshan_clean_file_path(const char* path)
char* cwd = NULL;
char* filter = NULL;
if(!path || strlen(path) < 1)
/* NOTE: the last check in this if statement is for path strings that
* begin with the '<' character. We assume that these are special
* reserved paths used by Darshan, like <STDIN>.
*/
if(!path || strlen(path) < 1 || path[0] == '<')
return(NULL);
if(path[0] == '/')
......
......@@ -80,6 +80,13 @@ void (*mod_static_init_fns[])(void) =
NULL
};
#ifdef DARSHAN_LUSTRE
/* XXX need to use extern to get Lustre module's instrumentation function
* since modules have no way of providing this to darshan-core
*/
extern void darshan_instrument_lustre_file(const char *filepath, int fd);
#endif
#define DARSHAN_CORE_LOCK() pthread_mutex_lock(&darshan_core_mutex)
#define DARSHAN_CORE_UNLOCK() pthread_mutex_unlock(&darshan_core_mutex)
......@@ -1764,7 +1771,7 @@ void darshan_shutdown_bench(int argc, char **argv)
darshan_mpiio_shutdown_bench_setup(1);
if(my_rank == 0)
printf("# 1 unique file per proc\n");
fprintf(stderr, "# 1 unique file per proc\n");
DARSHAN_MPI_CALL(PMPI_Barrier)(MPI_COMM_WORLD);
darshan_core_shutdown();
darshan_core = NULL;
......@@ -1779,7 +1786,7 @@ void darshan_shutdown_bench(int argc, char **argv)
darshan_mpiio_shutdown_bench_setup(2);
if(my_rank == 0)
printf("# 1 shared file per proc\n");
fprintf(stderr, "# 1 shared file per proc\n");
DARSHAN_MPI_CALL(PMPI_Barrier)(MPI_COMM_WORLD);
darshan_core_shutdown();
darshan_core = NULL;
......@@ -1794,7 +1801,7 @@ void darshan_shutdown_bench(int argc, char **argv)
darshan_mpiio_shutdown_bench_setup(3);
if(my_rank == 0)
printf("# 1024 unique files per proc\n");
fprintf(stderr, "# 1024 unique files per proc\n");
DARSHAN_MPI_CALL(PMPI_Barrier)(MPI_COMM_WORLD);
darshan_core_shutdown();
darshan_core = NULL;
......@@ -1809,7 +1816,7 @@ void darshan_shutdown_bench(int argc, char **argv)
darshan_mpiio_shutdown_bench_setup(4);
if(my_rank == 0)
printf("# 1024 shared files per proc\n");
fprintf(stderr, "# 1024 shared files per proc\n");
DARSHAN_MPI_CALL(PMPI_Barrier)(MPI_COMM_WORLD);
darshan_core_shutdown();
darshan_core = NULL;
......@@ -1986,6 +1993,19 @@ void *darshan_core_register_record(
return(rec_buf);;
}
void darshan_instrument_fs_data(int fs_type, const char *path, int fd)
{
#ifdef DARSHAN_LUSTRE
/* allow lustre to generate a record if we configured with lustre support */
if(fs_type == LL_SUPER_MAGIC)
{
darshan_instrument_lustre_file(path, fd);
return;
}
#endif
return;
}
double darshan_core_wtime()
{
DARSHAN_CORE_LOCK();
......
......@@ -69,11 +69,12 @@ static int my_rank = -1;
#define HDF5_PRE_RECORD() do { \
HDF5_LOCK(); \
if(!hdf5_runtime && !instrumentation_disabled) hdf5_runtime_initialize(); \
if(!hdf5_runtime) { \
HDF5_UNLOCK(); \
return(ret); \
if(!instrumentation_disabled) { \
if(!hdf5_runtime) hdf5_runtime_initialize(); \
if(hdf5_runtime) break; \
} \
HDF5_UNLOCK(); \
return(ret); \
} while(0)
#define HDF5_POST_RECORD() do { \
......@@ -339,6 +340,7 @@ static void hdf5_cleanup_runtime()
free(hdf5_runtime);
hdf5_runtime = NULL;
instrumentation_disabled = 0;
return;
}
......@@ -365,6 +367,10 @@ static void hdf5_shutdown(
HDF5_LOCK();
assert(hdf5_runtime);
/* disable further instrumentation */
instrumentation_disabled = 1;
hdf5_rec_count = hdf5_runtime->file_rec_count;
/* if there are globally shared files, do a shared file reduction */
......@@ -440,9 +446,6 @@ static void hdf5_shutdown(
/* shutdown internal structures used for instrumenting */
hdf5_cleanup_runtime();
/* disable further instrumentation */
instrumentation_disabled = 1;
HDF5_UNLOCK();
return;
}
......
......@@ -61,10 +61,14 @@ void darshan_instrument_lustre_file(const char* filepath, int fd)
int ret;
LUSTRE_LOCK();
if(instrumentation_disabled)
{
LUSTRE_UNLOCK();
return;
}
/* try to init module if not already and if instrumentation isn't disabled */
if(!lustre_runtime && !instrumentation_disabled)
lustre_runtime_initialize();
/* try to init module if not already */
if(!lustre_runtime) lustre_runtime_initialize();
/* if we aren't initialized, just back out */
if(!lustre_runtime)
......@@ -226,6 +230,10 @@ static void lustre_shutdown(
LUSTRE_LOCK();
assert(lustre_runtime);
/* disable further instrumentation while we shutdown */
instrumentation_disabled = 1;
lustre_runtime->record_buffer = *lustre_buf;
lustre_runtime->record_buffer_size = *lustre_buf_sz;
......@@ -268,9 +276,7 @@ static void lustre_shutdown(
darshan_clear_record_refs(&(lustre_runtime->record_id_hash), 1);
free(lustre_runtime);
lustre_runtime = NULL;
/* disable further instrumentation */
instrumentation_disabled = 1;
instrumentation_disabled = 0;
LUSTRE_UNLOCK();
return;
......
......@@ -97,11 +97,12 @@ static int my_rank = -1;
#define MPIIO_PRE_RECORD() do { \
MPIIO_LOCK(); \
if(!mpiio_runtime && !instrumentation_disabled) mpiio_runtime_initialize(); \
if(!mpiio_runtime) { \
MPIIO_UNLOCK(); \
return(ret); \
if(!instrumentation_disabled) { \
if(!mpiio_runtime) mpiio_runtime_initialize(); \
if(mpiio_runtime) break; \
} \
MPIIO_UNLOCK(); \
return(ret); \
} while(0)
#define MPIIO_POST_RECORD() do { \
......@@ -1169,6 +1170,7 @@ static void mpiio_cleanup_runtime()
free(mpiio_runtime);
mpiio_runtime = NULL;
instrumentation_disabled = 0;
return;
}
......@@ -1247,6 +1249,9 @@ void darshan_mpiio_shutdown_bench_setup(int test_case)
return;
}
free(fh_array);
free(size_array);
return;
}
......@@ -1273,6 +1278,10 @@ static void mpiio_shutdown(
MPIIO_LOCK();
assert(mpiio_runtime);
/* disable further instrumentation while we shutdown */
instrumentation_disabled = 1;
mpiio_rec_count = mpiio_runtime->file_rec_count;
/* perform any final transformations on MPIIO file records before
......@@ -1381,9 +1390,6 @@ static void mpiio_shutdown(
/* shutdown internal structures used for instrumenting */
mpiio_cleanup_runtime();
/* disable further instrumentation */
instrumentation_disabled = 1;
MPIIO_UNLOCK();
return;
}
......
......@@ -116,11 +116,12 @@ static int my_rank = -1;
*/
#define NULL_PRE_RECORD() do { \
NULL_LOCK(); \
if(!null_runtime && !instrumentation_disabled) null_runtime_initialize(); \
if(!null_runtime) { \
NULL_UNLOCK(); \
return(ret); \
if(!instrumentation_disabled) { \
if(!null_runtime) null_runtime_initialize(); \
if(null_runtime) break; \
} \
NULL_UNLOCK(); \
return(ret); \
} while(0)
/* the NULL_POST_RECORD macro is executed after performing NULL
......@@ -294,6 +295,7 @@ static void null_cleanup_runtime()
free(null_runtime);
null_runtime = NULL;
instrumentation_disabled = 0;
return;
}
......@@ -315,6 +317,9 @@ static void null_shutdown(
NULL_LOCK();
assert(null_runtime);
/* disable further instrumentation while we shutdown */
instrumentation_disabled = 1;
/* NOTE: this function can be used to run collective operations prior to
* shutting down the module, as implied by the MPI communicator passed in
* as the first agrument. Typically, module developers will want to run a
......@@ -336,9 +341,6 @@ static void null_shutdown(
/* shutdown internal structures used for instrumenting */
null_cleanup_runtime();
/* disable further instrumentation */
instrumentation_disabled = 1;
NULL_UNLOCK();
return;
}
......
......@@ -65,11 +65,12 @@ static int my_rank = -1;
#define PNETCDF_PRE_RECORD() do { \
PNETCDF_LOCK(); \
if(!pnetcdf_runtime && !instrumentation_disabled) pnetcdf_runtime_initialize(); \
if(!pnetcdf_runtime) { \
PNETCDF_UNLOCK(); \
return(ret); \
if(!instrumentation_disabled) { \
if(!pnetcdf_runtime) pnetcdf_runtime_initialize(); \
if(pnetcdf_runtime) break; \
} \
PNETCDF_UNLOCK(); \
return(ret); \
} while(0)
#define PNETCDF_POST_RECORD() do { \
......@@ -336,6 +337,7 @@ static void pnetcdf_cleanup_runtime()
free(pnetcdf_runtime);
pnetcdf_runtime = NULL;
instrumentation_disabled = 0;
return;
}
......@@ -363,6 +365,10 @@ static void pnetcdf_shutdown(
PNETCDF_LOCK();
assert(pnetcdf_runtime);
/* disable further instrumentation while we shutdown */
instrumentation_disabled = 1;
pnetcdf_rec_count = pnetcdf_runtime->file_rec_count;
/* if there are globally shared files, do a shared file reduction */
......@@ -439,9 +445,6 @@ static void pnetcdf_shutdown(
/* shutdown internal structures used for instrumenting */
pnetcdf_cleanup_runtime();
/* disable further instrumentation */
instrumentation_disabled = 1;
PNETCDF_UNLOCK();
return;
}
......
......@@ -37,9 +37,6 @@ typedef int64_t off64_t;
#define aiocb64 aiocb
#endif
#ifdef DARSHAN_LUSTRE
#include <lustre/lustre_user.h>
#endif
DARSHAN_FORWARD_DECL(open, int, (const char *path, int flags, ...));
DARSHAN_FORWARD_DECL(open64, int, (const char *path, int flags, ...));
......@@ -142,8 +139,6 @@ static void posix_runtime_initialize(
void);
static struct posix_file_record_ref *posix_track_new_file_record(
darshan_record_id rec_id, const char *path);
static void posix_instrument_fs_data(
int fs_type, const char *path, int fd);
static void posix_aio_tracker_add(
int fd, void *aiocbp);
static struct posix_aio_tracker* posix_aio_tracker_del(
......@@ -162,13 +157,6 @@ static void posix_shutdown(
MPI_Comm mod_comm, darshan_record_id *shared_recs,
int shared_rec_count, void **posix_buf, int *posix_buf_sz);
#ifdef DARSHAN_LUSTRE
/* XXX modules don't expose an API for other modules, so use extern to get
* Lustre instrumentation function
*/
extern void darshan_instrument_lustre_file(const char *filepath, int fd);
#endif
static struct posix_runtime *posix_runtime = NULL;
static pthread_mutex_t posix_runtime_mutex = PTHREAD_RECURSIVE_MUTEX_INITIALIZER_NP;
static int instrumentation_disabled = 0;
......@@ -180,11 +168,12 @@ static int darshan_mem_alignment = 1;
#define POSIX_PRE_RECORD() do { \
POSIX_LOCK(); \
if(!posix_runtime && !instrumentation_disabled) posix_runtime_initialize(); \
if(!posix_runtime) { \
POSIX_UNLOCK(); \
return(ret); \
if(!instrumentation_disabled) { \
if(!posix_runtime) posix_runtime_initialize(); \
if(posix_runtime) break; \
} \
POSIX_UNLOCK(); \
return(ret); \
} while(0)
#define POSIX_POST_RECORD() do { \
......@@ -221,7 +210,7 @@ static int darshan_mem_alignment = 1;
DARSHAN_TIMER_INC_NO_OVERLAP(rec_ref->file_rec->fcounters[POSIX_F_META_TIME], \
__tm1, __tm2, rec_ref->last_meta_end); \
darshan_add_record_ref(&(posix_runtime->fd_hash), &__ret, sizeof(int), rec_ref); \
posix_instrument_fs_data(rec_ref->fs_type, newpath, __ret); \
darshan_instrument_fs_data(rec_ref->fs_type, newpath, __ret); \
if(newpath != __path) free(newpath); \
} while(0)
......@@ -1313,26 +1302,13 @@ static struct posix_file_record_ref *posix_track_new_file_record(
file_rec->base_rec.rank = my_rank;
file_rec->counters[POSIX_MEM_ALIGNMENT] = darshan_mem_alignment;
file_rec->counters[POSIX_FILE_ALIGNMENT] = fs_info.block_size;
rec_ref->file_rec = file_rec;
rec_ref->fs_type = fs_info.fs_type;
rec_ref->file_rec = file_rec;
posix_runtime->file_rec_count++;
return(rec_ref);
}
static void posix_instrument_fs_data(int fs_type, const char *path, int fd)
{
#ifdef DARSHAN_LUSTRE
/* allow lustre to generate a record if we configured with lustre support */
if(fs_type == LL_SUPER_MAGIC)
{
darshan_instrument_lustre_file(path, fd);
return;
}
#endif
return;
}
/* finds the tracker structure for a given aio operation, removes it from
* the associated linked list for this file record, and returns a pointer.
*
......@@ -1709,6 +1685,7 @@ static void posix_cleanup_runtime()
free(posix_runtime);
posix_runtime = NULL;
instrumentation_disabled = 0;
return;
}
......@@ -1808,6 +1785,10 @@ static void posix_shutdown(
POSIX_LOCK();
assert(posix_runtime);
/* disable instrumentation while we shutdown */
instrumentation_disabled = 1;
posix_rec_count = posix_runtime->file_rec_count;
/* perform any final transformations on POSIX file records before
......@@ -1917,9 +1898,6 @@ static void posix_shutdown(
/* shutdown internal structures used for instrumenting */
posix_cleanup_runtime();
/* disable further instrumentation */
instrumentation_disabled = 1;
POSIX_UNLOCK();
return;
}
......
......@@ -94,7 +94,9 @@ DARSHAN_FORWARD_DECL(fputc, int, (int c, FILE *stream));
DARSHAN_FORWARD_DECL(putw, int, (int w, FILE *stream));
DARSHAN_FORWARD_DECL(fputs, int, (const char *s, FILE *stream));
DARSHAN_FORWARD_DECL(fprintf, int, (FILE *stream, const char *format, ...));
DARSHAN_FORWARD_DECL(printf, int, (const char *format, ...));
DARSHAN_FORWARD_DECL(vfprintf, int, (FILE *stream, const char *format, va_list));
DARSHAN_FORWARD_DECL(vprintf, int, (const char *format, va_list));
DARSHAN_FORWARD_DECL(fread, size_t, (void *ptr, size_t size, size_t nmemb, FILE *stream));
DARSHAN_FORWARD_DECL(fgetc, int, (FILE *stream));
DARSHAN_FORWARD_DECL(getw, int, (FILE *stream));
......@@ -119,6 +121,7 @@ struct stdio_file_record_ref
double last_meta_end;
double last_read_end;
double last_write_end;
int fs_type;
};
/* The stdio_runtime structure maintains necessary state for storing
......@@ -159,11 +162,12 @@ static void stdio_cleanup_runtime();
#define STDIO_PRE_RECORD() do { \
STDIO_LOCK(); \
if(!stdio_runtime && !instrumentation_disabled) stdio_runtime_initialize(); \
if(!stdio_runtime) { \
STDIO_UNLOCK(); \
return(ret); \
if(!instrumentation_disabled) { \
if(!stdio_runtime) stdio_runtime_initialize(); \
if(stdio_runtime) break; \
} \
STDIO_UNLOCK(); \
return(ret); \
} while(0)
#define STDIO_POST_RECORD() do { \
......@@ -174,6 +178,7 @@ static void stdio_cleanup_runtime();
darshan_record_id rec_id; \
struct stdio_file_record_ref* rec_ref; \
char *newpath; \
int __fd; \
if(__ret == NULL) break; \
newpath = darshan_clean_file_path(__path); \
if(!newpath) newpath = (char*)__path; \
......@@ -196,6 +201,8 @@ static void stdio_cleanup_runtime();
rec_ref->file_rec->fcounters[STDIO_F_OPEN_END_TIMESTAMP] = __tm2; \
DARSHAN_TIMER_INC_NO_OVERLAP(rec_ref->file_rec->fcounters[STDIO_F_META_TIME], __tm1, __tm2, rec_ref->last_meta_end); \
darshan_add_record_ref(&(stdio_runtime->stream_hash), &(__ret), sizeof(__ret), rec_ref); \
__fd = fileno(__ret); \
darshan_instrument_fs_data(rec_ref->fs_type, newpath, __fd); \
if(newpath != (char*)__path) free(newpath); \
} while(0)
......@@ -458,6 +465,25 @@ int DARSHAN_DECL(fputs)(const char *s, FILE *stream)
return(ret);
}
int DARSHAN_DECL(vprintf)(const char *format, va_list ap)
{
int ret;
double tm1, tm2;
MAP_OR_FAIL(vprintf);
tm1 = darshan_core_wtime();
ret = __real_vprintf(format, ap);
tm2 = darshan_core_wtime();
STDIO_PRE_RECORD();
if(ret > 0)
STDIO_RECORD_WRITE(stdout, ret, tm1, tm2, 0);
STDIO_POST_RECORD();
return(ret);
}
int DARSHAN_DECL(vfprintf)(FILE *stream, const char *format, va_list ap)
{
int ret;
......@@ -467,14 +493,38 @@ int DARSHAN_DECL(vfprintf)(FILE *stream, const char *format, va_list ap)
MAP_OR_FAIL(vfprintf);
tm1 = darshan_core_wtime();
start_off = ftell(stream);
ret = __real_vfprintf(stream, format, ap);
end_off = ftell(stream);
tm2 = darshan_core_wtime();
STDIO_PRE_RECORD();
if(ret > 0)
STDIO_RECORD_WRITE(stream, (end_off-start_off), tm1, tm2, 0);
STDIO_RECORD_WRITE(stream, ret, tm1, tm2, 0);
STDIO_POST_RECORD();
return(ret);
}
int DARSHAN_DECL(printf)(const char *format, ...)
{
int ret;
double tm1, tm2;
va_list ap;
MAP_OR_FAIL(vprintf);
tm1 = darshan_core_wtime();
/* NOTE: we intentionally switch to vprintf here to handle the variable
* length arguments.
*/
va_start(ap, format);
ret = __real_vprintf(format, ap);
va_end(ap);
tm2 = darshan_core_wtime();
STDIO_PRE_RECORD();
if(ret > 0)
STDIO_RECORD_WRITE(stdout, ret, tm1, tm2, 0);
STDIO_POST_RECORD();
return(ret);
......@@ -486,7 +536,6 @@ int DARSHAN_DECL(fprintf)(FILE *stream, const char *format, ...)
int ret;
double tm1, tm2;
va_list ap;
long start_off, end_off;
MAP_OR_FAIL(vfprintf);
......@@ -494,16 +543,14 @@ int DARSHAN_DECL(fprintf)(FILE *stream, const char *format, ...)
/* NOTE: we intentionally switch to vfprintf here to handle the variable
* length arguments.
*/
start_off = ftell(stream);
va_start(ap, format);
ret = __real_vfprintf(stream, format, ap);
va_end(ap);
end_off = ftell(stream);
tm2 = darshan_core_wtime();
STDIO_PRE_RECORD();
if(ret > 0)
STDIO_RECORD_WRITE(stream, (end_off-start_off), tm1, tm2, 0);
STDIO_RECORD_WRITE(stream, ret, tm1, tm2, 0);
STDIO_POST_RECORD();
return(ret);
......@@ -724,7 +771,11 @@ void DARSHAN_DECL(rewind)(FILE *stream)
* value in this wrapper.
*/
STDIO_LOCK();
if(!stdio_runtime && !instrumentation_disabled) stdio_runtime_initialize();
if(instrumentation_disabled) {
STDIO_UNLOCK();
return;
}
if(!stdio_runtime) stdio_runtime_initialize();
if(!stdio_runtime) {
STDIO_UNLOCK();
return;
......@@ -908,10 +959,6 @@ static void stdio_runtime_initialize()
/* try to store default number of records for this module */
stdio_buf_size = DARSHAN_DEF_MOD_REC_COUNT * sizeof(struct darshan_stdio_file);
/* don't do anything if already initialized or instrumenation is disabled */
if(stdio_runtime || instrumentation_disabled)
return;
/* register the stdio module with darshan core */
darshan_core_register_module(
DARSHAN_STDIO_MOD,
......@@ -934,6 +981,11 @@ static void stdio_runtime_initialize()
return;
}
memset(stdio_runtime, 0, sizeof(*stdio_runtime));
/* instantiate records for stdin, stdout, and stderr */
STDIO_RECORD_OPEN(stdin, "<STDIN>", 0, 0);
STDIO_RECORD_OPEN(stdout, "<STDOUT>", 0, 0);
STDIO_RECORD_OPEN(stderr, "<STDERR>", 0, 0);
}
/************************************************************************
......@@ -1066,6 +1118,10 @@ static void stdio_shutdown(
STDIO_LOCK();
assert(stdio_runtime);
/* disable further instrumentation */
instrumentation_disabled = 1;
stdio_rec_count = stdio_runtime->file_rec_count;
/* if there are globally shared files, do a shared file reduction */
......@@ -1169,9 +1225,6 @@ static void stdio_shutdown(
/* shutdown internal structures used for instrumenting */
stdio_cleanup_runtime();
/* disable further instrumentation */
instrumentation_disabled = 1;
STDIO_UNLOCK();
return;
......@@ -1182,6 +1235,7 @@ static struct stdio_file_record_ref *stdio_track_new_file_record(
{
struct darshan_stdio_file *file_rec = NULL;
struct stdio_file_record_ref *rec_ref = NULL;
struct darshan_fs_info fs_info;
int ret;
rec_ref = malloc(sizeof(*rec_ref));
......@@ -1206,7 +1260,7 @@ static struct stdio_file_record_ref *stdio_track_new_file_record(
path,
DARSHAN_STDIO_MOD,
sizeof(struct darshan_stdio_file),
NULL);
&fs_info);
if(!file_rec)
{
......@@ -1219,6 +1273,7 @@ static struct stdio_file_record_ref *stdio_track_new_file_record(
/* registering this file record was successful, so initialize some fields */
file_rec->base_rec.id = rec_id;
file_rec->base_rec.rank = my_rank;
rec_ref->fs_type = fs_info.fs_type;
rec_ref->file_rec = file_rec;
stdio_runtime->file_rec_count++;
......@@ -1233,6 +1288,7 @@ static void stdio_cleanup_runtime()
free(stdio_runtime);
stdio_runtime = NULL;
instrumentation_disabled = 0;
return;
}
......
......@@ -20,6 +20,7 @@
--wrap=fseeko64
--wrap=fprintf
--wrap=vfprintf
--wrap=vprintf
--wrap=fputc
--wrap=fputs
--wrap=putw
......@@ -27,3 +28,4 @@
--wrap=fsetpos64
--wrap=rewind
--wrap=__isoc99_fscanf
--wrap=printf
......@@ -120,7 +120,7 @@ static int darshan_log_put_bgq_rec(darshan_fd fd, void* bgq_buf, int ver)
int ret;
ret = darshan_log_put_mod(fd, DARSHAN_BGQ_MOD, rec,
sizeof(struct darshan_bgq_record), ver);
sizeof(struct darshan_bgq_record), DARSHAN_BGQ_VER);
if(ret < 0)
return(-1);
......
......@@ -85,7 +85,7 @@ static int darshan_log_put_hdf5_file(darshan_fd fd, void* hdf5_buf, int ver)
int ret;
ret = darshan_log_put_mod(fd, DARSHAN_HDF5_MOD, file,
sizeof(struct darshan_hdf5_file), ver);
sizeof(struct darshan_hdf5_file), DARSHAN_HDF5_VER);
if(ret < 0)
return(-1);
......
......@@ -593,15 +593,15 @@ int darshan_log_put_namehash(darshan_fd fd, struct darshan_name_record_ref *hash
assert(state);
/* allocate memory for largest possible hash record */
name_rec = malloc(sizeof(struct darshan_name_record) + PATH_MAX);
name_rec = malloc(sizeof(darshan_record_id) + PATH_MAX + 1);
if(!name_rec)
return(-1);
memset(name_rec, 0, sizeof(struct darshan_name_record) + PATH_MAX);
memset(name_rec, 0, sizeof(darshan_record_id) + PATH_MAX + 1);
/* individually serialize each hash record and write to log file */
HASH_ITER(hlink, hash, ref, tmp)
{
name_rec_len = sizeof(struct darshan_name_record) + strlen(ref->name_record->name);
name_rec_len = sizeof(darshan_record_id) + strlen(ref->name_record->name) + 1;
memcpy(name_rec, ref->name_record, name_rec_len);
/* write this hash entry to log file */
......
......@@ -94,7 +94,7 @@ static int darshan_log_put_lustre_record(darshan_fd fd, void* lustre_buf, int ve
int ret;
ret = darshan_log_put_mod(fd, DARSHAN_LUSTRE_MOD, rec,
LUSTRE_RECORD_SIZE(rec->counters[LUSTRE_STRIPE_WIDTH]), ver);
LUSTRE_RECORD_SIZE(rec->counters[LUSTRE_STRIPE_WIDTH]), DARSHAN_LUSTRE_VER);
if(ret < 0)
return(-1);
......
......@@ -85,7 +85,7 @@ static int darshan_log_put_mpiio_file(darshan_fd fd, void* mpiio_buf, int ver)
int ret;
ret = darshan_log_put_mod(fd, DARSHAN_MPIIO_MOD, file,
sizeof(struct darshan_mpiio_file), ver);
sizeof(struct darshan_mpiio_file), DARSHAN_MPIIO_VER);
if(ret < 0)
return(-1);
......
......@@ -102,7 +102,7 @@ static int darshan_log_put_null_record(darshan_fd fd, void* null_buf, int ver)
/* append NULL record to darshan log file */
ret = darshan_log_put_mod(fd, DARSHAN_NULL_MOD, rec,
sizeof(struct darshan_null_record), ver);
sizeof(struct darshan_null_record), DARSHAN_NULL_VER);
if(ret < 0)
return(-1);
......