port hdf5 and pnetcdf modules to new API changes

darshan-runtime/Makefile.in

@@ -35,8 +35,7 @@ CFLAGS_SHARED = -DDARSHAN_CONFIG_H=\"darshan-runtime-config.h\" -I . -I$(srcdir)
 
 LIBS = -lz @LIBBZ2@
 
-DARSHAN_STATIC_MOD_OBJS = lib/darshan-posix.o lib/darshan-mpiio.o
-# TODO: lib/darshan-hdf5.o lib/darshan-pnetcdf.o
+DARSHAN_STATIC_MOD_OBJS = lib/darshan-posix.o lib/darshan-mpiio.o lib/darshan-hdf5.o lib/darshan-pnetcdf.o
 DARSHAN_DYNAMIC_MOD_OBJS = lib/darshan-posix.po lib/darshan-mpiio.po lib/darshan-hdf5.po lib/darshan-pnetcdf.po
 
 ifdef DARSHAN_USE_BGQ

darshan-runtime/lib/darshan-posix.c

@@ -217,6 +217,7 @@ static int darshan_mem_alignment = 1;
     DARSHAN_TIMER_INC_NO_OVERLAP(rec_ref->file_rec->fcounters[POSIX_F_META_TIME], \
         __tm1, __tm2, rec_ref->last_meta_end); \
     darshan_add_record_ref(&(posix_runtime->fd_hash), &__ret, sizeof(int), rec_ref); \
+    if(newpath != __path) free(newpath); \
 } while(0)
 
 #define POSIX_RECORD_READ(__ret, __fd, __pread_flag, __pread_offset, __aligned, __stream_flag, __tm1, __tm2) do { \