updated compiler scripts to fix link order in cases like this:

mpixlc -o conftest -g -I/soft/apps/hdf5-1.6.6/include -L/soft/apps/hdf5-1.6.6/lib conftest.c -lhdf5 -lm git-svn-id: https://svn.mcs.anl.gov/repos/darshan/trunk@216 3b7491f3-a168-0410-bf4b-c445ed680a29

updated compiler scripts to fix link order in cases like this:
mpixlc -o conftest -g -I/soft/apps/hdf5-1.6.6/include -L/soft/apps/hdf5-1.6.6/lib conftest.c -lhdf5 -lm git-svn-id: https://svn.mcs.anl.gov/repos/darshan/trunk@216 3b7491f3-a168-0410-bf4b-c445ed680a29
26d95238 · Philip Carns · 840bab4f · 26d95238 · 26d95238 · 26d95238
Commit 26d95238 authored Mar 15, 2010 by Philip Carns
20 changed files
--- a/compilers/fast/mpicc-trace-bgp-V1R4.in
+++ b/compilers/fast/mpicc-trace-bgp-V1R4.in
@@ -261,7 +261,10 @@ if [ "$linking" = yes ] ; then
    
    stock_link_cmd="$CC ${allargs[@]} -I$includedir $CFLAGS $LDFLAGS -L$libdir -L$opalibdir $mpilibs $MPI_OTHERLIBS"

-    darshan_link_cmd="$CC ${allargs[@]} -L${DARSHAN_LIB_PATH} ${CP_ZLIB_LINK_FLAGS} -ldarshan-mpi-io -lz -I$includedir $CFLAGS ${CP_WRAPPERS} $LDFLAGS -L$libdir -L$opalibdir $mpilibs $MPI_OTHERLIBS -L${DARSHAN_LIB_PATH} -ldarshan-posix"
+    # if allargs includes any libraries, then we need to get 
+    # -ldarshan-mpi-io in there first
+    newallargs=`echo ${allargs[@]} | sed 's/ -l/ -ldarshan-mpi-io -l/'`
+    darshan_link_cmd="$CC $newallargs -L${DARSHAN_LIB_PATH} ${CP_ZLIB_LINK_FLAGS} -ldarshan-mpi-io -lz -I$includedir $CFLAGS ${CP_WRAPPERS} $LDFLAGS -L$libdir -L$opalibdir $mpilibs $MPI_OTHERLIBS -L${DARSHAN_LIB_PATH} -ldarshan-posix"

    used_darshan=0


--- a/compilers/fast/mpicxx-trace-bgp-V1R4.in
+++ b/compilers/fast/mpicxx-trace-bgp-V1R4.in
@@ -261,7 +261,10 @@ if [ "$linking" = yes ] ; then
    
    stock_link_cmd="$CXX ${allargs[@]} -I$includedir $CXXFLAGS $LDFLAGS -L$libdir -L$opalibdir $shllibpath $cxxlibs $mpilibs $MPI_OTHERLIBS"
    
-    darshan_link_cmd="$CXX ${allargs[@]} -L${DARSHAN_LIB_PATH} ${CP_ZLIB_LINK_FLAGS} -lcxxmpich.cnk -ldarshan-mpi-io -lz -I$includedir $CXXFLAGS ${CP_WRAPPERS} $LDFLAGS -L$libdir -L$opalibdir $shllibpath $cxxlibs $mpilibs $MPI_OTHERLIBS -L${DARSHAN_LIB_PATH} -ldarshan-posix" 
+    # if allargs includes any libraries, then we need to get 
+    # -ldarshan-mpi-io in there first
+    newallargs=`echo ${allargs[@]} | sed 's/ -l/ -ldarshan-mpi-io -l/'`
+    darshan_link_cmd="$CXX $newallargs -L${DARSHAN_LIB_PATH} ${CP_ZLIB_LINK_FLAGS} -lcxxmpich.cnk -ldarshan-mpi-io -lz -I$includedir $CXXFLAGS ${CP_WRAPPERS} $LDFLAGS -L$libdir -L$opalibdir $shllibpath $cxxlibs $mpilibs $MPI_OTHERLIBS -L${DARSHAN_LIB_PATH} -ldarshan-posix" 

    used_darshan=0


--- a/compilers/fast/mpif77-trace-bgp-V1R4.in
+++ b/compilers/fast/mpif77-trace-bgp-V1R4.in
@@ -309,7 +309,10 @@ if [ "$linking" = yes ] ; then
    
    stock_link_cmd="$FC ${allargs[@]} -I$includedir $FFLAGS $LDFLAGS -L$libdir -L$opalibdir $mpilibs $MPI_OTHERLIBS"

-    darshan_link_cmd="$FC ${CP_WRAPPERS} ${allargs[@]} -L${DARSHAN_LIB_PATH} ${CP_ZLIB_LINK_FLAGS} -lfmpich.cnk -ldarshan-posix -ldarshan-mpi-io -I$includedir $FFLAGS $LDFLAGS -L$libdir -L$opalibdir $mpilibs $MPI_OTHERLIBS -L${DARSHAN_LIB_PATH} -ldarshan-posix -ldarshan-mpi-io -lz"
+    # if allargs includes any libraries, then we need to get 
+    # -ldarshan-mpi-io in there first
+    newallargs=`echo ${allargs[@]} | sed 's/ -l/ -ldarshan-mpi-io -l/'`
+    darshan_link_cmd="$FC ${CP_WRAPPERS} $newallargs -L${DARSHAN_LIB_PATH} ${CP_ZLIB_LINK_FLAGS} -lfmpich.cnk -ldarshan-posix -ldarshan-mpi-io -I$includedir $FFLAGS $LDFLAGS -L$libdir -L$opalibdir $mpilibs $MPI_OTHERLIBS -L${DARSHAN_LIB_PATH} -ldarshan-posix -ldarshan-mpi-io -lz"

    used_darshan=0


--- a/compilers/fast/mpif90-trace-bgp-V1R4.in
+++ b/compilers/fast/mpif90-trace-bgp-V1R4.in
@@ -356,7 +356,10 @@ if [ "$linking" = yes ] ; then
    
    stock_link_cmd="$F90 ${allargs[@]} $F90INCDIRS $F90MODDIRS $F90FLAGS $LDFLAGS -L$libdir -L$opalibdir $F90MODLIBS $mpilibs $MPI_OTHERLIBS"

-    darshan_link_cmd="$F90 ${CP_WRAPPERS} ${allargs[@]} -L${DARSHAN_LIB_PATH} ${CP_ZLIB_LINK_FLAGS} -lfmpich.cnk -ldarshan-posix -ldarshan-mpi-io $F90INCDIRS $F90MODDIRS $F90FLAGS $LDFLAGS -L$libdir -L$opalibdir $F90MODLIBS $mpilibs $MPI_OTHERLIBS -L${DARSHAN_LIB_PATH} -ldarshan-posix -ldarshan-mpi-io -lz"
+    # if allargs includes any libraries, then we need to get 
+    # -ldarshan-mpi-io in there first
+    newallargs=`echo ${allargs[@]} | sed 's/ -l/ -ldarshan-mpi-io -l/'`
+    darshan_link_cmd="$F90 ${CP_WRAPPERS} $newallargs -L${DARSHAN_LIB_PATH} ${CP_ZLIB_LINK_FLAGS} -lfmpich.cnk -ldarshan-posix -ldarshan-mpi-io $F90INCDIRS $F90MODDIRS $F90FLAGS $LDFLAGS -L$libdir -L$opalibdir $F90MODLIBS $mpilibs $MPI_OTHERLIBS -L${DARSHAN_LIB_PATH} -ldarshan-posix -ldarshan-mpi-io -lz"

    used_darshan=0


--- a/compilers/fast/mpixlc-trace-bgp-V1R4.in
+++ b/compilers/fast/mpixlc-trace-bgp-V1R4.in
@@ -261,7 +261,10 @@ if [ "$linking" = yes ] ; then
    
    stock_link_cmd="$CC ${allargs[@]} -I$includedir $CFLAGS $LDFLAGS -L$libdir -L$opalibdir $mpilibs $MPI_OTHERLIBS"

-    darshan_link_cmd="$CC ${allargs[@]} -L${DARSHAN_LIB_PATH} ${CP_ZLIB_LINK_FLAGS} -ldarshan-mpi-io -lz -I$includedir $CFLAGS ${CP_WRAPPERS} $LDFLAGS -L$libdir -L$opalibdir $mpilibs $MPI_OTHERLIBS -L${DARSHAN_LIB_PATH} -ldarshan-posix"
+    # if allargs includes any libraries, then we need to get 
+    # -ldarshan-mpi-io in there first
+    newallargs=`echo ${allargs[@]} | sed 's/ -l/ -ldarshan-mpi-io -l/'`
+    darshan_link_cmd="$CC $newallargs -L${DARSHAN_LIB_PATH} ${CP_ZLIB_LINK_FLAGS} -ldarshan-mpi-io -lz -I$includedir $CFLAGS ${CP_WRAPPERS} $LDFLAGS -L$libdir -L$opalibdir $mpilibs $MPI_OTHERLIBS -L${DARSHAN_LIB_PATH} -ldarshan-posix"

    used_darshan=0


--- a/compilers/fast/mpixlc_r-trace-bgp-V1R4.in
+++ b/compilers/fast/mpixlc_r-trace-bgp-V1R4.in
@@ -261,7 +261,10 @@ if [ "$linking" = yes ] ; then
    
    stock_link_cmd="$CC ${allargs[@]} -I$includedir $CFLAGS $LDFLAGS -L$libdir -L$opalibdir $mpilibs $MPI_OTHERLIBS"

-    darshan_link_cmd="$CC ${allargs[@]} -L${DARSHAN_LIB_PATH} ${CP_ZLIB_LINK_FLAGS} -ldarshan-mpi-io -lz -I$includedir $CFLAGS ${CP_WRAPPERS} $LDFLAGS -L$libdir -L$opalibdir $mpilibs $MPI_OTHERLIBS -L${DARSHAN_LIB_PATH} -ldarshan-posix"
+    # if allargs includes any libraries, then we need to get 
+    # -ldarshan-mpi-io in there first
+    newallargs=`echo ${allargs[@]} | sed 's/ -l/ -ldarshan-mpi-io -l/'`
+    darshan_link_cmd="$CC $newallargs -L${DARSHAN_LIB_PATH} ${CP_ZLIB_LINK_FLAGS} -ldarshan-mpi-io -lz -I$includedir $CFLAGS ${CP_WRAPPERS} $LDFLAGS -L$libdir -L$opalibdir $mpilibs $MPI_OTHERLIBS -L${DARSHAN_LIB_PATH} -ldarshan-posix"

    used_darshan=0


--- a/compilers/fast/mpixlcxx-trace-bgp-V1R4.in
+++ b/compilers/fast/mpixlcxx-trace-bgp-V1R4.in
@@ -261,7 +261,10 @@ if [ "$linking" = yes ] ; then
    
    stock_link_cmd="$CXX ${allargs[@]} -I$includedir $CXXFLAGS $LDFLAGS -L$libdir -L$opalibdir $shllibpath $cxxlibs $mpilibs $MPI_OTHERLIBS"
    
-    darshan_link_cmd="$CXX ${allargs[@]} -L${DARSHAN_LIB_PATH} ${CP_ZLIB_LINK_FLAGS} -lcxxmpich.cnk -ldarshan-mpi-io -lz -I$includedir $CXXFLAGS ${CP_WRAPPERS} $LDFLAGS -L$libdir -L$opalibdir $shllibpath $cxxlibs $mpilibs $MPI_OTHERLIBS -L${DARSHAN_LIB_PATH} -ldarshan-posix" 
+    # if allargs includes any libraries, then we need to get 
+    # -ldarshan-mpi-io in there first
+    newallargs=`echo ${allargs[@]} | sed 's/ -l/ -ldarshan-mpi-io -l/'`
+    darshan_link_cmd="$CXX $newallargs -L${DARSHAN_LIB_PATH} ${CP_ZLIB_LINK_FLAGS} -lcxxmpich.cnk -ldarshan-mpi-io -lz -I$includedir $CXXFLAGS ${CP_WRAPPERS} $LDFLAGS -L$libdir -L$opalibdir $shllibpath $cxxlibs $mpilibs $MPI_OTHERLIBS -L${DARSHAN_LIB_PATH} -ldarshan-posix" 

    used_darshan=0


--- a/compilers/fast/mpixlcxx_r-trace-bgp-V1R4.in
+++ b/compilers/fast/mpixlcxx_r-trace-bgp-V1R4.in
@@ -261,7 +261,10 @@ if [ "$linking" = yes ] ; then
    
    stock_link_cmd="$CXX ${allargs[@]} -I$includedir $CXXFLAGS $LDFLAGS -L$libdir -L$opalibdir $shllibpath $cxxlibs $mpilibs $MPI_OTHERLIBS"
    
-    darshan_link_cmd="$CXX ${allargs[@]} -L${DARSHAN_LIB_PATH} ${CP_ZLIB_LINK_FLAGS} -lcxxmpich.cnk -ldarshan-mpi-io -lz -I$includedir $CXXFLAGS ${CP_WRAPPERS} $LDFLAGS -L$libdir -L$opalibdir $shllibpath $cxxlibs $mpilibs $MPI_OTHERLIBS -L${DARSHAN_LIB_PATH} -ldarshan-posix" 
+    # if allargs includes any libraries, then we need to get 
+    # -ldarshan-mpi-io in there first
+    newallargs=`echo ${allargs[@]} | sed 's/ -l/ -ldarshan-mpi-io -l/'`
+    darshan_link_cmd="$CXX $newallargs -L${DARSHAN_LIB_PATH} ${CP_ZLIB_LINK_FLAGS} -lcxxmpich.cnk -ldarshan-mpi-io -lz -I$includedir $CXXFLAGS ${CP_WRAPPERS} $LDFLAGS -L$libdir -L$opalibdir $shllibpath $cxxlibs $mpilibs $MPI_OTHERLIBS -L${DARSHAN_LIB_PATH} -ldarshan-posix" 

    used_darshan=0


--- a/compilers/fast/mpixlf2003-trace-bgp-V1R4.in
+++ b/compilers/fast/mpixlf2003-trace-bgp-V1R4.in
@@ -309,7 +309,10 @@ if [ "$linking" = yes ] ; then
    
    stock_link_cmd="$FC ${allargs[@]} -I$includedir $FFLAGS $LDFLAGS -L$libdir -L$opalibdir $mpilibs $MPI_OTHERLIBS"

-    darshan_link_cmd="$FC ${CP_WRAPPERS} ${allargs[@]} -L${DARSHAN_LIB_PATH} ${CP_ZLIB_LINK_FLAGS} -lfmpich.cnk -ldarshan-posix -ldarshan-mpi-io -I$includedir $FFLAGS $LDFLAGS -L$libdir -L$opalibdir $mpilibs $MPI_OTHERLIBS -L${DARSHAN_LIB_PATH} -ldarshan-posix -ldarshan-mpi-io -lz"
+    # if allargs includes any libraries, then we need to get 
+    # -ldarshan-mpi-io in there first
+    newallargs=`echo ${allargs[@]} | sed 's/ -l/ -ldarshan-mpi-io -l/'`
+    darshan_link_cmd="$FC ${CP_WRAPPERS} $newallargs -L${DARSHAN_LIB_PATH} ${CP_ZLIB_LINK_FLAGS} -lfmpich.cnk -ldarshan-posix -ldarshan-mpi-io -I$includedir $FFLAGS $LDFLAGS -L$libdir -L$opalibdir $mpilibs $MPI_OTHERLIBS -L${DARSHAN_LIB_PATH} -ldarshan-posix -ldarshan-mpi-io -lz"

    used_darshan=0


--- a/compilers/fast/mpixlf2003_r-trace-bgp-V1R4.in
+++ b/compilers/fast/mpixlf2003_r-trace-bgp-V1R4.in
@@ -309,7 +309,10 @@ if [ "$linking" = yes ] ; then
    
    stock_link_cmd="$FC ${allargs[@]} -I$includedir $FFLAGS $LDFLAGS -L$libdir -L$opalibdir $mpilibs $MPI_OTHERLIBS"

-    darshan_link_cmd="$FC ${CP_WRAPPERS} ${allargs[@]} -L${DARSHAN_LIB_PATH} ${CP_ZLIB_LINK_FLAGS} -lfmpich.cnk -ldarshan-posix -ldarshan-mpi-io -I$includedir $FFLAGS $LDFLAGS -L$libdir -L$opalibdir $mpilibs $MPI_OTHERLIBS -L${DARSHAN_LIB_PATH} -ldarshan-posix -ldarshan-mpi-io -lz"
+    # if allargs includes any libraries, then we need to get 
+    # -ldarshan-mpi-io in there first
+    newallargs=`echo ${allargs[@]} | sed 's/ -l/ -ldarshan-mpi-io -l/'`
+    darshan_link_cmd="$FC ${CP_WRAPPERS} $newallargs -L${DARSHAN_LIB_PATH} ${CP_ZLIB_LINK_FLAGS} -lfmpich.cnk -ldarshan-posix -ldarshan-mpi-io -I$includedir $FFLAGS $LDFLAGS -L$libdir -L$opalibdir $mpilibs $MPI_OTHERLIBS -L${DARSHAN_LIB_PATH} -ldarshan-posix -ldarshan-mpi-io -lz"

    used_darshan=0


--- a/compilers/fast/mpixlf77-trace-bgp-V1R4.in
+++ b/compilers/fast/mpixlf77-trace-bgp-V1R4.in
@@ -309,7 +309,10 @@ if [ "$linking" = yes ] ; then
    
    stock_link_cmd="$FC ${allargs[@]} -I$includedir $FFLAGS $LDFLAGS -L$libdir -L$opalibdir $mpilibs $MPI_OTHERLIBS"

-    darshan_link_cmd="$FC ${CP_WRAPPERS} ${allargs[@]} -L${DARSHAN_LIB_PATH} ${CP_ZLIB_LINK_FLAGS} -lfmpich.cnk -ldarshan-posix -ldarshan-mpi-io -I$includedir $FFLAGS $LDFLAGS -L$libdir -L$opalibdir $mpilibs $MPI_OTHERLIBS -L${DARSHAN_LIB_PATH} -ldarshan-posix -ldarshan-mpi-io -lz"
+    # if allargs includes any libraries, then we need to get 
+    # -ldarshan-mpi-io in there first
+    newallargs=`echo ${allargs[@]} | sed 's/ -l/ -ldarshan-mpi-io -l/'`
+    darshan_link_cmd="$FC ${CP_WRAPPERS} $newallargs -L${DARSHAN_LIB_PATH} ${CP_ZLIB_LINK_FLAGS} -lfmpich.cnk -ldarshan-posix -ldarshan-mpi-io -I$includedir $FFLAGS $LDFLAGS -L$libdir -L$opalibdir $mpilibs $MPI_OTHERLIBS -L${DARSHAN_LIB_PATH} -ldarshan-posix -ldarshan-mpi-io -lz"

    used_darshan=0


--- a/compilers/fast/mpixlf77_r-trace-bgp-V1R4.in
+++ b/compilers/fast/mpixlf77_r-trace-bgp-V1R4.in
@@ -309,7 +309,10 @@ if [ "$linking" = yes ] ; then
    
    stock_link_cmd="$FC ${allargs[@]} -I$includedir $FFLAGS $LDFLAGS -L$libdir -L$opalibdir $mpilibs $MPI_OTHERLIBS"

-    darshan_link_cmd="$FC ${CP_WRAPPERS} ${allargs[@]} -L${DARSHAN_LIB_PATH} ${CP_ZLIB_LINK_FLAGS} -lfmpich.cnk -ldarshan-posix -ldarshan-mpi-io -I$includedir $FFLAGS $LDFLAGS -L$libdir -L$opalibdir $mpilibs $MPI_OTHERLIBS -L${DARSHAN_LIB_PATH} -ldarshan-posix -ldarshan-mpi-io -lz"
+    # if allargs includes any libraries, then we need to get 
+    # -ldarshan-mpi-io in there first
+    newallargs=`echo ${allargs[@]} | sed 's/ -l/ -ldarshan-mpi-io -l/'`
+    darshan_link_cmd="$FC ${CP_WRAPPERS} $newallargs -L${DARSHAN_LIB_PATH} ${CP_ZLIB_LINK_FLAGS} -lfmpich.cnk -ldarshan-posix -ldarshan-mpi-io -I$includedir $FFLAGS $LDFLAGS -L$libdir -L$opalibdir $mpilibs $MPI_OTHERLIBS -L${DARSHAN_LIB_PATH} -ldarshan-posix -ldarshan-mpi-io -lz"

    used_darshan=0


--- a/compilers/fast/mpixlf90-trace-bgp-V1R4.in
+++ b/compilers/fast/mpixlf90-trace-bgp-V1R4.in
@@ -309,7 +309,10 @@ if [ "$linking" = yes ] ; then
    
    stock_link_cmd="$FC ${allargs[@]} -I$includedir $FFLAGS $LDFLAGS -L$libdir -L$opalibdir $mpilibs $MPI_OTHERLIBS"

-    darshan_link_cmd="$FC ${CP_WRAPPERS} ${allargs[@]} -L${DARSHAN_LIB_PATH} ${CP_ZLIB_LINK_FLAGS} -lfmpich.cnk -ldarshan-posix -ldarshan-mpi-io -I$includedir $FFLAGS $LDFLAGS -L$libdir -L$opalibdir $mpilibs $MPI_OTHERLIBS -L${DARSHAN_LIB_PATH} -ldarshan-posix -ldarshan-mpi-io -lz"
+    # if allargs includes any libraries, then we need to get 
+    # -ldarshan-mpi-io in there first
+    newallargs=`echo ${allargs[@]} | sed 's/ -l/ -ldarshan-mpi-io -l/'`
+    darshan_link_cmd="$FC ${CP_WRAPPERS} $newallargs -L${DARSHAN_LIB_PATH} ${CP_ZLIB_LINK_FLAGS} -lfmpich.cnk -ldarshan-posix -ldarshan-mpi-io -I$includedir $FFLAGS $LDFLAGS -L$libdir -L$opalibdir $mpilibs $MPI_OTHERLIBS -L${DARSHAN_LIB_PATH} -ldarshan-posix -ldarshan-mpi-io -lz"

    used_darshan=0


--- a/compilers/fast/mpixlf90_r-trace-bgp-V1R4.in
+++ b/compilers/fast/mpixlf90_r-trace-bgp-V1R4.in
@@ -309,7 +309,10 @@ if [ "$linking" = yes ] ; then
    
    stock_link_cmd="$FC ${allargs[@]} -I$includedir $FFLAGS $LDFLAGS -L$libdir -L$opalibdir $mpilibs $MPI_OTHERLIBS"

-    darshan_link_cmd="$FC ${CP_WRAPPERS} ${allargs[@]} -L${DARSHAN_LIB_PATH} ${CP_ZLIB_LINK_FLAGS} -lfmpich.cnk -ldarshan-posix -ldarshan-mpi-io -I$includedir $FFLAGS $LDFLAGS -L$libdir -L$opalibdir $mpilibs $MPI_OTHERLIBS -L${DARSHAN_LIB_PATH} -ldarshan-posix -ldarshan-mpi-io -lz"
+    # if allargs includes any libraries, then we need to get 
+    # -ldarshan-mpi-io in there first
+    newallargs=`echo ${allargs[@]} | sed 's/ -l/ -ldarshan-mpi-io -l/'`
+    darshan_link_cmd="$FC ${CP_WRAPPERS} $newallargs -L${DARSHAN_LIB_PATH} ${CP_ZLIB_LINK_FLAGS} -lfmpich.cnk -ldarshan-posix -ldarshan-mpi-io -I$includedir $FFLAGS $LDFLAGS -L$libdir -L$opalibdir $mpilibs $MPI_OTHERLIBS -L${DARSHAN_LIB_PATH} -ldarshan-posix -ldarshan-mpi-io -lz"

    used_darshan=0


--- a/compilers/fast/mpixlf95-trace-bgp-V1R4.in
+++ b/compilers/fast/mpixlf95-trace-bgp-V1R4.in
@@ -309,7 +309,10 @@ if [ "$linking" = yes ] ; then
    
    stock_link_cmd="$FC ${allargs[@]} -I$includedir $FFLAGS $LDFLAGS -L$libdir -L$opalibdir $mpilibs $MPI_OTHERLIBS"

-    darshan_link_cmd="$FC ${CP_WRAPPERS} ${allargs[@]} -L${DARSHAN_LIB_PATH} ${CP_ZLIB_LINK_FLAGS} -lfmpich.cnk -ldarshan-posix -ldarshan-mpi-io -I$includedir $FFLAGS $LDFLAGS -L$libdir -L$opalibdir $mpilibs $MPI_OTHERLIBS -L${DARSHAN_LIB_PATH} -ldarshan-posix -ldarshan-mpi-io -lz"
+    # if allargs includes any libraries, then we need to get 
+    # -ldarshan-mpi-io in there first
+    newallargs=`echo ${allargs[@]} | sed 's/ -l/ -ldarshan-mpi-io -l/'`
+    darshan_link_cmd="$FC ${CP_WRAPPERS} $newallargs -L${DARSHAN_LIB_PATH} ${CP_ZLIB_LINK_FLAGS} -lfmpich.cnk -ldarshan-posix -ldarshan-mpi-io -I$includedir $FFLAGS $LDFLAGS -L$libdir -L$opalibdir $mpilibs $MPI_OTHERLIBS -L${DARSHAN_LIB_PATH} -ldarshan-posix -ldarshan-mpi-io -lz"

    used_darshan=0


--- a/compilers/fast/mpixlf95_r-trace-bgp-V1R4.in
+++ b/compilers/fast/mpixlf95_r-trace-bgp-V1R4.in
@@ -309,7 +309,10 @@ if [ "$linking" = yes ] ; then
    
    stock_link_cmd="$FC ${allargs[@]} -I$includedir $FFLAGS $LDFLAGS -L$libdir -L$opalibdir $mpilibs $MPI_OTHERLIBS"

-    darshan_link_cmd="$FC ${CP_WRAPPERS} ${allargs[@]} -L${DARSHAN_LIB_PATH} ${CP_ZLIB_LINK_FLAGS} -lfmpich.cnk -ldarshan-posix -ldarshan-mpi-io -I$includedir $FFLAGS $LDFLAGS -L$libdir -L$opalibdir $mpilibs $MPI_OTHERLIBS -L${DARSHAN_LIB_PATH} -ldarshan-posix -ldarshan-mpi-io -lz"
+    # if allargs includes any libraries, then we need to get 
+    # -ldarshan-mpi-io in there first
+    newallargs=`echo ${allargs[@]} | sed 's/ -l/ -ldarshan-mpi-io -l/'`
+    darshan_link_cmd="$FC ${CP_WRAPPERS} $newallargs -L${DARSHAN_LIB_PATH} ${CP_ZLIB_LINK_FLAGS} -lfmpich.cnk -ldarshan-posix -ldarshan-mpi-io -I$includedir $FFLAGS $LDFLAGS -L$libdir -L$opalibdir $mpilibs $MPI_OTHERLIBS -L${DARSHAN_LIB_PATH} -ldarshan-posix -ldarshan-mpi-io -lz"

    used_darshan=0


--- a/compilers/mpicc-trace-bgp-V1R4.in
+++ b/compilers/mpicc-trace-bgp-V1R4.in
@@ -261,7 +261,10 @@ if [ "$linking" = yes ] ; then
    
    stock_link_cmd="$CC ${allargs[@]} -I$includedir $CFLAGS $LDFLAGS -L$libdir -L$opalibdir $mpilibs $MPI_OTHERLIBS"

-    darshan_link_cmd="$CC ${allargs[@]} -L${DARSHAN_LIB_PATH} ${CP_ZLIB_LINK_FLAGS} -ldarshan-mpi-io -lz -I$includedir $CFLAGS ${CP_WRAPPERS} $LDFLAGS -L$libdir -L$opalibdir $mpilibs $MPI_OTHERLIBS -L${DARSHAN_LIB_PATH} -ldarshan-posix"
+    # if allargs includes any libraries, then we need to get 
+    # -ldarshan-mpi-io in there first
+    newallargs=`echo ${allargs[@]} | sed 's/ -l/ -ldarshan-mpi-io -l/'`
+    darshan_link_cmd="$CC $newallargs -L${DARSHAN_LIB_PATH} ${CP_ZLIB_LINK_FLAGS} -ldarshan-mpi-io -lz -I$includedir $CFLAGS ${CP_WRAPPERS} $LDFLAGS -L$libdir -L$opalibdir $mpilibs $MPI_OTHERLIBS -L${DARSHAN_LIB_PATH} -ldarshan-posix"

    used_darshan=0


--- a/compilers/mpicc-trace-pcarns.in
+++ b/compilers/mpicc-trace-pcarns.in
@@ -244,7 +244,10 @@ if [ "$linking" = yes ] ; then
    
    stock_link_cmd="$CC ${allargs[@]} -I$includedir $CFLAGS $LDFLAGS -L$libdir $mpilibs $MPI_OTHERLIBS"

-    darshan_link_cmd="$CC ${allargs[@]} -L${DARSHAN_LIB_PATH} ${CP_ZLIB_LINK_FLAGS} -ldarshan-mpi-io -lz -I$includedir $CFLAGS ${CP_WRAPPERS} $LDFLAGS -L$libdir $mpilibs $MPI_OTHERLIBS -L${DARSHAN_LIB_PATH} -ldarshan-posix"
+    # if allargs includes any libraries, then we need to get 
+    # -ldarshan-mpi-io in there first
+    newallargs=`echo ${allargs[@]} | sed 's/ -l/ -ldarshan-mpi-io -l/'`
+    darshan_link_cmd="$CC $newallargs -L${DARSHAN_LIB_PATH} ${CP_ZLIB_LINK_FLAGS} -ldarshan-mpi-io -lz -I$includedir $CFLAGS ${CP_WRAPPERS} $LDFLAGS -L$libdir $mpilibs $MPI_OTHERLIBS -L${DARSHAN_LIB_PATH} -ldarshan-posix"

    used_darshan=0


--- a/compilers/mpicxx-trace-bgp-V1R4.in
+++ b/compilers/mpicxx-trace-bgp-V1R4.in
@@ -261,7 +261,10 @@ if [ "$linking" = yes ] ; then
    
    stock_link_cmd="$CXX ${allargs[@]} -I$includedir $CXXFLAGS $LDFLAGS -L$libdir -L$opalibdir $shllibpath $cxxlibs $mpilibs $MPI_OTHERLIBS"
    
-    darshan_link_cmd="$CXX ${allargs[@]} -L${DARSHAN_LIB_PATH} ${CP_ZLIB_LINK_FLAGS} -lcxxmpich.cnk -ldarshan-mpi-io -lz -I$includedir $CXXFLAGS ${CP_WRAPPERS} $LDFLAGS -L$libdir -L$opalibdir $shllibpath $cxxlibs $mpilibs $MPI_OTHERLIBS -L${DARSHAN_LIB_PATH} -ldarshan-posix" 
+    # if allargs includes any libraries, then we need to get 
+    # -ldarshan-mpi-io in there first
+    newallargs=`echo ${allargs[@]} | sed 's/ -l/ -ldarshan-mpi-io -l/'`
+    darshan_link_cmd="$CXX $newallargs -L${DARSHAN_LIB_PATH} ${CP_ZLIB_LINK_FLAGS} -lcxxmpich.cnk -ldarshan-mpi-io -lz -I$includedir $CXXFLAGS ${CP_WRAPPERS} $LDFLAGS -L$libdir -L$opalibdir $shllibpath $cxxlibs $mpilibs $MPI_OTHERLIBS -L${DARSHAN_LIB_PATH} -ldarshan-posix" 

    used_darshan=0


--- a/compilers/mpicxx-trace-pcarns.in
+++ b/compilers/mpicxx-trace-pcarns.in
@@ -244,7 +244,10 @@ if [ "$linking" = yes ] ; then
    
    stock_link_cmd="$CXX ${allargs[@]} -I$includedir $CXXFLAGS $LDFLAGS -L$libdir $shllibpath $cxxlibs $mpilibs $MPI_OTHERLIBS"
    
-    darshan_link_cmd="$CXX ${allargs[@]} -L${DARSHAN_LIB_PATH} ${CP_ZLIB_LINK_FLAGS} -lmpichcxx -ldarshan-mpi-io -lz -I$includedir $CXXFLAGS ${CP_WRAPPERS} $LDFLAGS -L$libdir $shllibpath $cxxlibs $mpilibs $MPI_OTHERLIBS -L${DARSHAN_LIB_PATH} -ldarshan-posix" 
+    # if allargs includes any libraries, then we need to get 
+    # -ldarshan-mpi-io in there first
+    newallargs=`echo ${allargs[@]} | sed 's/ -l/ -ldarshan-mpi-io -l/'`
+    darshan_link_cmd="$CXX $newallargs -L${DARSHAN_LIB_PATH} ${CP_ZLIB_LINK_FLAGS} -lmpichcxx -ldarshan-mpi-io -lz -I$includedir $CXXFLAGS ${CP_WRAPPERS} $LDFLAGS -L$libdir $shllibpath $cxxlibs $mpilibs $MPI_OTHERLIBS -L${DARSHAN_LIB_PATH} -ldarshan-posix" 

    used_darshan=0