CONTRIBUTORS.md

-Contributors to date (in chronological order, with current affiliations)
-- Ning Liu, IBM
-- Jason Cope, DDN
-- Philip Carns, Argonne National Labs
-- Misbah Mubarak, Argonne National Labs
-- Shane Snyder, Argonne National Labs
-- Jonathan P. Jenkins
-- Noah Wolfe, RPI
-- Nikhil Jain, Lawrence Livermore Labs
-- Matthieu Dorier, Argonne National Labs
-- Caitlin Ross, RPI
-- Xu Yang, Amazon
+Contributors to date (with affiliations at time of contribution)
+
+- Philip Carns, Argonne National Laboratory
+- Misbah Mubarak, Argonne National Laboratory
+- Shane Snyder, Argonne National Laboratory
+- Jonathan P. Jenkins, Argonne National Laboratory
+- Noah Wolfe, Rensselaer Polytechnic Institute
+- Nikhil Jain, Lawrence Livermore National Laboratory
+- Jens Domke, Univ. of Dresden
+- Giorgis Georgakoudis, Lawrence Livermore National Laboratory
+- Matthieu Dorier, Argonne National Laboratory
+- Caitlin Ross, Rennselaer Polytechnic Institute
+- Xu Yang, Illinois Institute of Tech.
 - Jens Domke, Tokyo Institute of Tech.
-- Xin Wang, IIT
+- Xin Wang, Illinois Institute of Tech.
+- Neil McGlohon, Rensselaer Polytechnic Institute
+- Elsa Gonsiorowski, Rensselaer Polytechnic Institute
+- Justin M. Wozniak, Argonne National Laboratory
+- Robert B. Ross, Argonne National Laboratory
+- Lee Savoie, Univ. of Arizona 
+- Ning Liu, Rensselaer Polytechnic Institute
+- Jason Cope, Argonne National Laboratory
+
+Contributions:
 
-Contributions of external (non-Argonne) collaborators:
+Misbah Mubarak (ANL)
+    - Introduced 1-D dragonfly and enhanced torus network model.
+    - Added quality of service in dragonfly and megafly network models.
+    - Added MPI simulation layer to simulate MPI operations.
+    - Updated and merged burst buffer storage model with 2-D dragonfly.
+    - Added and validated 2-D dragonfly network model.
+    - Added multiple workload sources including MPI communication, Scalable
+      Workload Models, DUMPI communication traces.
+    - Added online simulation capability with Argobots and SWMs.
+    - Instrumented the network models to report time-stepped series statistics. 
+    - Bug fixes for network, storage and workload models with CODES.
+
+Neil McGlohon (RPI)
+    - Introduced Dragonfly Plus/Megafly network model.
+    - Merged 1-D dragonfly and 2-D dragonfly network models.
+    - Updated adaptive routing in megafly and 1-D dragonfly network models. 
+    - Extended slim fly network model's dual-rail mode to arbitrary number of rails (pending).
 
 Nikhil Jain, Abhinav Bhatele (LLNL)
     - Improvements in credit-based flow control of CODES dragonfly and torus network models.
@@ -29,6 +55,12 @@ Jens Domke (U. of Dresden)
     - Static routing in fat tree network model including ground work for
       dumping the topology and reading the routing tables.
 
+John Jenkins 
+    - Introduced storage models in a separate codes-storage-repo.
+    - Enhanced the codes-mapping APIs to map advanced combinations on PEs.
+    - Bug fixing with network models.
+    - Bug fixing with MPI simulation layer.
+
 Xu Yang (IIT)
     - Added support for running multiple application workloads with CODES MPI
       Simulation layer, along with supporting scripts and utilities.
@@ -39,6 +71,7 @@ Noah Wolfe (RPI):
     - Added a fat tree network model that supports full and pruned fat tree
       network.
     - Added a multi-rail implementation for the fat tree networks (pending).
+    - Added a dual-rail implementation for slim fly networks (pending).
     - Bug reporter for CODES network models.
 
 Caitlin Ross (RPI):

COPYRIGHT

-
-				  COPYRIGHT
-
-The following is a notice of limited availability of the code, and disclaimer
-which must be included in the prologue of the code and in all source listings
-of the code.
-
-Copyright Notice
- + 2013 University of Chicago
-
-Permission is hereby granted to use, reproduce, prepare derivative works, and
-to redistribute to others.  This software was authored by:
-
-Mathematics and Computer Science Division
-Argonne National Laboratory, Argonne IL 60439
-
-(and)
-
-Computer Science Department
-Rensselaer Polytechnic Institute, Troy NY 12180
-
-			      GOVERNMENT LICENSE
-
-Portions of this material resulted from work developed under a U.S.
-Government Contract and are subject to the following license: the Government
-is granted for itself and others acting on its behalf a paid-up, nonexclusive,
-irrevocable worldwide license in this computer software to reproduce, prepare
-derivative works, and perform publicly and display publicly.
-
-				  DISCLAIMER
-
-This computer code material was prepared, in part, as an account of work
-sponsored by an agency of the United States Government.  Neither the United
-States, nor the University of Chicago, nor any of their employees, makes any
-warranty express or implied, or assumes any legal liability or responsibility
-for the accuracy, completeness, or usefulness of any information, apparatus,
-product, or process disclosed, or represents that its use would not infringe
-privately owned rights.

LICENSE

+************** Copyright © 2019, UChicago Argonne, LLC ***************
+All Rights Reserved
+Software Name: CO-Design of Exascale Storage and Network Architectures (CODES)
+By: Argonne National Laboratory, Rensselaer Polytechnic Institute, Lawrence Livermore National Laboratory, and Illinois Institute of Technology
+OPEN SOURCE LICENSE
+
+Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met:
+
+1. Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer.
+2. Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution.
+3. Neither the name of the copyright holder nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission.
+
+
+******************************************************************************************************
+DISCLAIMER
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+***************************************************************************************************

LICENSE.md

+************** Copyright © 2019, UChicago Argonne, LLC ***************
+All Rights Reserved
+Software Name: CO-Design of Exascale Storage and Network Architectures (CODES)
+By: Argonne National Laboratory, Rensselaer Polytechnic Institute, Lawrence Livermore National Laboratory, and Illinois Institute of Technology
+OPEN SOURCE LICENSE
+
+Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met:
+
+1. Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer.
+2. Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution.
+3. Neither the name of the copyright holder nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission.
+
+
+******************************************************************************************************
+DISCLAIMER
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+***************************************************************************************************

README.md

+# **IMPORTANT NOTICE**
+## THE CODES PROJECT HAS BEEN MOVED
+
+https://github.com/codes-org/codes
+
+As of June 21, 2019, the location of the repo has been moved to GitHub as part of the codebase's shift to its open source BSD License. All issues will be moved in some form to the new location followed by merge requests (if possible). I will do my best to keep the master branch of the two repositories up to date with each other. That being said, if there is any conflict, the GitHub repo should be taken as the truth.
+
+Thank you,
+
+Neil McGlohon
+
+https://github.com/codes-org/codes
+
+
+
 # CODES Discrete-event Simulation Framework
 
 https://xgitlab.cels.anl.gov/codes/codes/wikis/home
 
-Discrete event driven simulation of HPC system architectures and subsystems has emerged as a productive and cost-effective means to evaluating potential HPC designs, along with capabilities for executing simulations of extreme scale systems. The goal of the CODES project is use highly parallel simulation to explore the design of exascale storage/network architectures and distributed data-intensive science facilities. 
+Discrete event driven simulation of HPC system architectures and subsystems has emerged as a productive and cost-effective means to evaluating potential HPC designs, along with capabilities for executing simulations of extreme scale systems. The goal of the CODES project is to use highly parallel simulation to explore the design of exascale storage/network architectures and distributed data-intensive science facilities. 
 
 Our simulations build upon the Rensselaer Optimistic Simulation System (ROSS), a discrete event simulation framework that allows simulations to be run in parallel, decreasing the simulation run time of massive simulations to hours. We are using ROSS to explore topics including large-scale storage systems, I/O workloads, HPC network fabrics, distributed science systems, and data-intensive computation environments.
 

codes-vis-readme.md

 ## README for using ROSS instrumentation with CODES
 
-For details about the ROSS instrumentation, see the [ROSS Instrumentation blog post](http://carothersc.github.io/ROSS/instrumentation/instrumentation.html) 
+For details about the ROSS instrumentation, see the [ROSS Instrumentation blog post](http://ross-org.github.io/instrumentation/instrumentation.html)
 on the ROSS webpage.
- 
+
 
 There are currently 4 types of instrumentation: GVT-based, real time sampling, virtual time sampling, and event tracing.
 See the ROSS documentation for more info on the specific options or use `--help` with your model.
 To collect data about the simulation engine, no changes are needed to model code for any of the instrumentation modes.
 Some additions to the model code is needed in order to turn on any model-level data collection.
-See the "Model-level data sampling" section on [ROSS Instrumentation blog post](http://carothersc.github.io/ROSS/instrumentation/instrumentation.html).
+See the "Model-level data sampling" section on [ROSS Instrumentation blog post](http://ross-org.github.io/instrumentation/instrumentation.html).
 Here we describe CODES specific details.
 
 ### Register Instrumentation Callback Functions
@@ -37,13 +37,13 @@ The second pointer is for the data to be sampled at the GVT or real time samplin
 In this case the LPs have different function pointers since we want to collect different types of data for the two LP types.
 For the terminal, I set the appropriate size of the data to be collected, but for the router, the size of the data is dependent on the radix for the dragonfly configuration being used, which isn't known until runtime.
 
-*Note*: You can only reuse the function for event tracing for LPs that use the same type of message struct.  
+*Note*: You can only reuse the function for event tracing for LPs that use the same type of message struct.
 For example, the dragonfly terminal and router LPs both use the `terminal_message` struct, so they can
-use the same functions for event tracing.  
-However the model net base LP uses the `model_net_wrap_msg` struct, so it gets its own event collection function and `st_trace_type` struct, in order to read the event type correctly from the model. 
+use the same functions for event tracing.
+However the model net base LP uses the `model_net_wrap_msg` struct, so it gets its own event collection function and `st_trace_type` struct, in order to read the event type correctly from the model.
 
-In the ROSS instrumentation documentation, there are two methods provided for letting ROSS know about these `st_model_types` structs.  
-In CODES, this step is a little different, as `codes_mapping_setup()` calls `tw_lp_settype()`.  
+In the ROSS instrumentation documentation, there are two methods provided for letting ROSS know about these `st_model_types` structs.
+In CODES, this step is a little different, as `codes_mapping_setup()` calls `tw_lp_settype()`.
 Instead, you add a function to return this struct for each of your LP types:
 ```C
 static const st_model_types *dragonfly_get_model_types(void)
@@ -73,7 +73,7 @@ static void router_register_model_types(st_model_types *base_type)
 At this point, there are two different steps to follow depending on whether the model is one of the model-net models or not.
 
 ##### Model-net Models
-In the `model_net_method` struct, two fields have been added: `mn_model_stat_register` and `mn_get_model_stat_types`.  
+In the `model_net_method` struct, two fields have been added: `mn_model_stat_register` and `mn_get_model_stat_types`.
 You need to set these to the functions described above.  For example:
 
 ```C
@@ -109,27 +109,27 @@ st_model_types svr_model_types[] = {
 
 static void svr_register_model_types()
 {
-    st_model_type_register("server", &svr_model_types[0]);
+    st_model_type_register("ns-lp", &svr_model_types[0]);
 }
 
 int main(int argc, char **argv)
 {
     // ... some set up removed for brevity
-    
+
     model_net_register();
     svr_add_lp_type();
-    
+
     if (g_st_ev_trace || g_st_model_stats)
         svr_register_model_types();
-        
+
     codes_mapping_setup();
-    
+
     //...
 }
 ```
 
 `g_st_ev_trace` is a ROSS flag for determining if event tracing is turned on and `g_st_model_stats` determines if the GVT-based or real time instrumentation
-modes are collecting model-level data as well.  
+modes are collecting model-level data as well.
 
 
 ### CODES LPs that currently have event type collection implemented:
@@ -144,4 +144,3 @@ If you're using any of the following CODES models, you don't have to add anythin
 - slimfly router and terminal LPs (slimfly.c)
 - fat tree switch and terminal LPs (fat-tree.c)
 - model-net-base-lp (model-net-lp.c)
- 

codes/connection-manager.h

@@ -255,22 +255,34 @@ void ConnectionManager::add_connection(int dest_gid, ConnectionType type)
     switch (type)
     {
         case CONN_LOCAL:
-            conn.port = this->get_used_ports_for(CONN_LOCAL);
-            intraGroupConnections[conn.dest_lid].push_back(conn);
-            _used_intra_ports++;
+            if (intraGroupConnections.size() < _max_intra_ports) {
+                conn.port = this->get_used_ports_for(CONN_LOCAL);
+                intraGroupConnections[conn.dest_lid].push_back(conn);
+                _used_intra_ports++;
+            }
+            else
+                tw_error(TW_LOC,"Attempting to add too many local connections per router - exceeding configuration value: %d",_max_intra_ports);
             break;
 
         case CONN_GLOBAL:
-            conn.port = _max_intra_ports + this->get_used_ports_for(CONN_GLOBAL);
-            globalConnections[conn.dest_gid].push_back(conn);
-            _used_inter_ports++;
+            if(globalConnections.size() < _max_inter_ports) {
+                conn.port = _max_intra_ports + this->get_used_ports_for(CONN_GLOBAL);
+                globalConnections[conn.dest_gid].push_back(conn);
+                _used_inter_ports++;
+            }
+            else
+                tw_error(TW_LOC,"Attempting to add too many global connections per router - exceeding configuration value: %d",_max_inter_ports);
             break;
 
         case CONN_TERMINAL:
-            conn.port = _max_intra_ports + _max_inter_ports + this->get_used_ports_for(CONN_TERMINAL);
-            conn.dest_group_id = _source_group;
-            terminalConnections[conn.dest_gid].push_back(conn);
-            _used_terminal_ports++;
+            if(terminalConnections.size() < _max_terminal_ports){
+                conn.port = _max_intra_ports + _max_inter_ports + this->get_used_ports_for(CONN_TERMINAL);
+                conn.dest_group_id = _source_group;
+                terminalConnections[conn.dest_gid].push_back(conn);
+                _used_terminal_ports++;
+            }
+            else
+                tw_error(TW_LOC,"Attempting to add too many terminal connections per router - exceeding configuration value: %d",_max_terminal_ports);
             break;
 
         default:
@@ -534,18 +546,19 @@ void ConnectionManager::print_connections()
         int group_id = it->second.dest_group_id;
 
         int id,gid;
-        if( get_port_type(port_num) == CONN_LOCAL )
-        {
+        if( get_port_type(port_num) == CONN_LOCAL ) {
             id = it->second.dest_lid;
             gid = it->second.dest_gid;
-            printf("  %d   ->   (%d,%d)        :  %d  \n", port_num, id, gid, group_id);
+            printf("  %d   ->   (%d,%d)        :  %d     -  LOCAL\n", port_num, id, gid, group_id);
 
+        } 
+        else if (get_port_type(port_num) == CONN_GLOBAL) {
+            id = it->second.dest_gid;
+            printf("  %d   ->   %d        :  %d     -  GLOBAL\n", port_num, id, group_id);
         }
-            
-        else {
+        else if (get_port_type(port_num) == CONN_TERMINAL) {
             id = it->second.dest_gid;
-            printf("  %d   ->   %d        :  %d  \n", port_num, id, group_id);
-
+            printf("  %d   ->   %d        :  %d     -  TERMINAL\n", port_num, id, group_id);
         }
             
         ports_printed++;

codes/model-net-lp.h

@@ -24,6 +24,7 @@ extern "C" {
 #include "net/dragonfly.h"
 #include "net/dragonfly-custom.h"
 #include "net/dragonfly-plus.h"
+#include "net/dragonfly-dally.h"
 #include "net/slimfly.h"
 #include "net/fattree.h"
 #include "net/loggp.h"
@@ -133,6 +134,7 @@ typedef struct model_net_wrap_msg {
         terminal_message        m_dfly;  // dragonfly
         terminal_custom_message        m_custom_dfly;  // dragonfly-custom
         terminal_plus_message        m_dfly_plus;  // dragonfly plus
+        terminal_dally_message        m_dally_dfly;  // dragonfly dally
         slim_terminal_message   m_slim;  // slimfly
 	fattree_message		m_fat;   // fattree
         loggp_message           m_loggp; // loggp

codes/model-net.h

@@ -76,6 +76,8 @@ typedef struct mn_stats mn_stats;
     X(EXPRESS_MESH_ROUTER, "modelnet_express_mesh_router", "express_mesh_router", &express_mesh_router_method)\
     X(DRAGONFLY_PLUS, "modelnet_dragonfly_plus", "dragonfly_plus", &dragonfly_plus_method)\
     X(DRAGONFLY_PLUS_ROUTER, "modelnet_dragonfly_plus_router", "dragonfly_plus_router", &dragonfly_plus_router_method)\
+    X(DRAGONFLY_DALLY, "modelnet_dragonfly_dally", "dragonfly_dally", &dragonfly_dally_method)\
+    X(DRAGONFLY_DALLY_ROUTER, "modelnet_dragonfly_dally_router", "dragonfly_dally_router", &dragonfly_dally_router_method)\
     X(MAX_NETS,  NULL,                 NULL,        NULL)
 
 #define X(a,b,c,d) a,

codes/net/dragonfly-dally.h

+/*
+ * Copyright (C) 2014 University of Chicago.
+ * See COPYRIGHT notice in top-level directory.
+ *
+ */
+
+#ifndef DRAGONFLY_DALLY_H
+#define DRAGONFLY_DALLY_H
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+#include <ross.h>
+
+typedef struct terminal_dally_message terminal_dally_message;
+
+/* this message is used for both dragonfly compute nodes and routers */
+struct terminal_dally_message
+{
+  /* magic number */
+  int magic;
+  /* flit travel start time*/
+  tw_stime travel_start_time;
+ /* packet ID of the flit  */
+  unsigned long long packet_ID;
+  /* event type of the flit */
+  short  type;
+  /* category: comes from codes */
+  char category[CATEGORY_NAME_MAX];
+  /* store category hash in the event */
+  uint32_t category_hash;
+  /* final destination LP ID, this comes from codes can be a server or any other LP type*/
+  tw_lpid final_dest_gid;
+  /*sending LP ID from CODES, can be a server or any other LP type */
+  tw_lpid sender_lp;
+  tw_lpid sender_mn_lp; // source modelnet id
+ /* destination terminal ID of the dragonfly */
+  tw_lpid dest_terminal_id;
+  /* source terminal ID of the dragonfly */
+  unsigned int src_terminal_id;
+  /* message originating router id. MM: Can we calculate it through
+   * sender_mn_lp??*/
+  unsigned int origin_router_id;
+
+  /* number of hops traversed by the packet */
+  short my_N_hop;
+  short my_l_hop, my_g_hop;
+  short saved_channel;
+  short saved_vc;
+
+  int next_stop;
+
+  short nonmin_done;
+  /* Intermediate LP ID from which this message is coming */
+  unsigned int intm_lp_id;
+  /* last hop of the message, can be a terminal, local router or global router */
+  short last_hop;
+   /* For routing */
+  int intm_rtr_id;
+  int saved_src_dest;
+  int saved_src_chan;
+
+   uint32_t chunk_id;
+   uint32_t packet_size;
+   uint32_t message_id;
+   uint32_t total_size;
+
+   int remote_event_size_bytes;
+   int local_event_size_bytes;
+
+  // For buffer message
+   short vc_index;
+   int output_chan;
+   model_net_event_return event_rc;
+   int is_pull;
+   uint32_t pull_size;
+   int path_type;
+
+   /* for reverse computation */   
+   short num_rngs;
+   short num_cll;
+
+   int qos_index;
+   short last_saved_qos;
+   short qos_reset1;
+   short qos_reset2;
+
+   tw_stime saved_available_time;
+   tw_stime saved_avg_time;
+   tw_stime saved_rcv_time;
+   tw_stime saved_busy_time; 
+   tw_stime saved_total_time;
+   tw_stime saved_sample_time;
+   tw_stime msg_start_time;
+   tw_stime saved_busy_time_ross;
+   tw_stime saved_fin_chunks_ross;
+};
+
+#ifdef __cplusplus
+}
+#endif
+
+#endif /* end of include guard: DRAGONFLY_H */
+
+/*
+ * Local variables:
+ *  c-indent-level: 4
+ *  c-basic-offset: 4
+ * End:
+ *
+ * vim: ft=c ts=8 sts=4 sw=4 expandtab
+ */

codes/net/dragonfly-plus.h

@@ -83,6 +83,21 @@ struct terminal_plus_message
    int is_pull;
    uint32_t pull_size;
 
+   /* for counting reverse calls */
+   short num_rngs;
+   short num_cll;
+
+   /* qos related attributes */   
+   short last_saved_qos;
+   short qos_reset1;
+   short qos_reset2;
+
+   /* new qos rc - These are calloced in forward events, free'd in RC or commit_f */
+   /* note: dynamic memory here is OK since it's only accessed by the LP that alloced it in the first place. */
+   short rc_is_qos_set;
+   unsigned long long * rc_qos_data;
+   int * rc_qos_status;
+
    /* for reverse computation */
    int path_type;
    tw_stime saved_available_time;

configure.ac

@@ -2,7 +2,7 @@
 # Process this file with autoconf to produce a configure script.
 
 AC_PREREQ([2.67])
-AC_INIT([codes], [1.0.0], [http://trac.mcs.anl.gov/projects/codes/newticket],[],[http://www.mcs.anl.gov/projects/codes/])
+AC_INIT([codes], [1.1.0], [http://trac.mcs.anl.gov/projects/codes/newticket],[],[http://www.mcs.anl.gov/projects/codes/])
 LT_INIT
 
 
@@ -230,4 +230,7 @@ AC_CONFIG_FILES([Makefile])
 
 AC_OUTPUT([maint/codes.pc])
 AC_OUTPUT([src/network-workloads/conf/dragonfly-custom/modelnet-test-dragonfly-1728-nodes.conf])
+AC_OUTPUT([src/network-workloads/conf/dragonfly-plus/modelnet-test-dragonfly-plus.conf])
+AC_OUTPUT([src/network-workloads/conf/dragonfly-dally/modelnet-test-dragonfly-dally.conf])
+
 

doc/BUILD_STEPS

@@ -2,12 +2,12 @@ NOTE: see bottom of this file for suggested configurations on particular ANL
 machines.
 
 0 - Checkout, build, and install the trunk version of ROSS
-(https://github.com/carothersc/ROSS). At the time of
+(https://github.com/ross-org/ROSS). At the time of
 release (0.6.0), ROSS's latest commit hash was 10d7a06b2d, so this revision is
 "safe" in the unlikely case incompatible changes come along in the future. If
 working from the CODES master branches, use the ROSS master branch.
 
-    git clone http://github.com/carothersc/ROSS.git
+    git clone http://github.com/ross-org/ROSS.git
     # if using 0.5.2 release: git checkout d3bdc07
     cd ROSS
     mkdir build
@@ -22,7 +22,7 @@ working from the CODES master branches, use the ROSS master branch.
     ROSS/install/ directory>
 
     For more details on installing ROSS, go to
-    https://github.com/carothersc/ROSS/blob/master/README.md .
+    https://github.com/ross-org/ROSS/blob/master/README.md .
 
     If using ccmake to configure, don't forget to set CMAKE_C_COMPILER and
     CMAKE_CXX_COMPILER to mpicc/mpicxx

doc/GETTING_STARTED

@@ -14,7 +14,7 @@ https://lists.mcs.anl.gov/mailman/listinfo/codes-ross-users
 
 == CODES
 
-* main site: http://www.mcs.anl.gov/projects/codes/ 
+* main site: http://www.mcs.anl.gov/projects/codes/
 * repositories:
   * "base" (this repository): git.mcs.anl.gov:radix/codes-base
   * codes-net (networking component of CODES): git.mcs.anl.gov:radix/codes-net
@@ -22,11 +22,11 @@ https://lists.mcs.anl.gov/mailman/listinfo/codes-ross-users
 
 == ROSS
 
-* main site, repository, etc.: https://github.com/carothersc/ROSS
+* main site, repository, etc.: https://github.com/ross-org/ROSS
   * both the site and repository contain good documentation as well - refer to
     it for an in-depth introduction and overview of ROSS proper
 
-= Components of CODES 
+= Components of CODES
 
 == Configuration
 
@@ -36,7 +36,7 @@ structured configuration file. The configuration format allows categories, and
 optionally subgroups within the category, of key-value pairs for configuration.
 The LPGROUPS category defines the LP configuration. The PARAMS category is
 currently used for networking and ROSS-specific parameters. User-defined
-categories can also be used. 
+categories can also be used.
 
 The configuration system additionally allows LP specialization via the usage of
 "annotations". This allows two otherwise identical LPs to have different
@@ -125,7 +125,7 @@ The format of the metadata file is a set of lines containing:
   <group ID> <start ID> <end ID inclusive> <kernel file>
 where:
 * <group ID> is the ID of this group (see restrictions)
-* <start ID> and <end ID> form the range of logical client IDs that will 
+* <start ID> and <end ID> form the range of logical client IDs that will
   perform the given workload. Note that the end ID is inclusive, so a start,
   end pair of 0, 3 will include IDs 0, 1, 2, and 3. An <end ID> of -1 indicates
   to use the remaining number of clients as specified by the user.
@@ -202,6 +202,15 @@ should be everything up to the rank number. E.g., if the dumpi files are of the
 form "dumpi-YYYY.MM.DD.HH.MM.SS-XXXX.bin", then the input should be
 "dumpi-YYYY.MM.DD.HH.MM.SS-"
 
+=== Quality of Service
+
+Two models (dragonfly-dally.C and dragonfly-plus.C) can now support traffic 
+differentiation and prioritization. The models support quality of service by
+directing the network traffic on separate class of virtual channels. Additional
+documentation on using traffic classes can be found at the wiki link:
+
+https://xgitlab.cels.anl.gov/codes/codes/wikis/Quality-of-Service
+
 === Workload generator helpers
 
 The codes-jobmap API (codes/codes-jobmap.h) specifies mechanisms to initialize
@@ -288,7 +297,7 @@ lsm
 }
 
 The API can be found at codes/local-storage-model.h and example usage can be
-seen in tests/local-storage-model-test.c and tests/conf/lsm-test.conf. 
+seen in tests/local-storage-model-test.c and tests/conf/lsm-test.conf.
 
 The queueing policy of LSM is currently FIFO, and the default mode uses an
 implicit queue, simply incrementing counters and scheduling future events when
@@ -359,7 +368,7 @@ model-net LPs, like any other LP in CODES/ROSS, require specification in the
 configuration file as well as LP-specific parameters. To identify model-net LPs
 to CODES, we use the naming scheme of prefixing model-net LP names with the
 string "modelnet_". For example, the "simplenet" LP (see "model-net models")
-would be specified in the LPGROUPS section as "modelnet_simplenet". 
+would be specified in the LPGROUPS section as "modelnet_simplenet".
 
 Currently, model-net LPs expect their configuration values in the PARAMS
 section. This is due to historical precedent and may be changed in the future
@@ -389,7 +398,7 @@ program, they will be printed to the specified directory.
 = model-net models
 
 Currently, model-net contains a combination of analytical models and specific
-models for high-performance networking, with an HPC bent. 
+models for high-performance networking, with an HPC bent.
 
 Configuration files for each model can be found in tests/conf, under the name
 "model-net-test*.conf".
@@ -402,7 +411,7 @@ infinite packet buffering when routing. These are best used for models that
 require little fidelity out of the network performance. SimpleP2P is the same
 model as Simplenet, except it provides heterogeneous link capacities from point
 to point. Rather than a single entry, it requires files containing a matrix of
-point-to-point bandwidths and latencies. 
+point-to-point bandwidths and latencies.
 
 Simplenet models require two configuration parameters: "net_startup_ns" and
 "net_bw_mbps", which define the startup and bandwidth costs in nanoseconds and
@@ -426,7 +435,7 @@ The only configuration entry the LogGP model requires is
 configuration file.
 
 For more details on gathering parameters for the LogGP model, as well as it's
-usage and caveats, see the document src/model-net/doc/README.loggp.txt. 
+usage and caveats, see the document src/model-net/doc/README.loggp.txt.
 
 == Torus
 
@@ -454,7 +463,7 @@ The configuration parameters are a little trickier here, as additional LPs
 other than the "modelnet_dragonfly" LP must be specified. "modelnet_dragonfly"
 represent the node LPs (terminals), while a second type "dragonfly_router"
 represents a physical router. At least one "dragonfly_router" LP must be
-present in every LP group with a "modelnet_dragonfly" LP. 
+present in every LP group with a "modelnet_dragonfly" LP.
 
 Further configuration and model setup can be found at
 src/model-net/doc/README.dragonfly.txt.
@@ -509,7 +518,7 @@ section of the example.conf config file.
 == Server state and event handlers
 
 The server LP state maintains a count of the number of remote messages it has
-sent and received as well as the number of local completion messages.   
+sent and received as well as the number of local completion messages.
 
 For the server event message, we have four message types: KICKOFF, REQ, ACK and
 LOCAL. With a KICKOFF event, each LP sends a message to itself to begin the
@@ -517,7 +526,7 @@ simulation proper. To avoid event ties, we add a small amount of random noise
 using codes_local_latency. The REQ message is sent by a server to its
 neighboring server and when received, neighboring server sends back a message
 of type ACK. We've shown a hard-coded direct communication method which
-directly computes the LP ID, and a codes-mapping API-based method. 
+directly computes the LP ID, and a codes-mapping API-based method.
 
 == Server reverse computation
 
@@ -533,19 +542,19 @@ conservative modes, so reverse computation may not be necessary if the
 simulation is not compute- or memory-intensive.
 
 For our example program, recall the "forward" event handlers. They perform the
-following: 
+following:
 * Kickoff: send a message to the peer server, and increment sender LP's
     count of sent messages.
 * Request (received from peer server): increment receiver count of
     received messages, and send an acknowledgement to the sender.
 * Acknowledgement (received from message receiver): send the next
     message to the receiver and increment messages sent count. Set a flag
-    indicating whether a message has been sent.  
+    indicating whether a message has been sent.
 * Local model-net callback: increment the local model-net
     received messages count.
 
 In terms of LP state, the four operations are simply modifying counts. Hence,
-the "reverse" event handlers need to merely roll back those changes: 
+the "reverse" event handlers need to merely roll back those changes:
 * Kickoff: decrement sender LP's count of sent messages.
 * Request (received from peer server): decrement receiver count of
     received messages.

doc/RELEASE_NOTES

@@ -16,7 +16,7 @@ per compute node or one multi-port NIC per node.
 
 Adding a generic template for building new network models. For simplest case,
 only 2 functions and premable changes should suffice to add a new network.
-Updated Express Mesh network model to serve as an example. For details, see 
+Updated Express Mesh network model to serve as an example. For details, see
 
 Darshan workload generator has been updated to use Darshan version 3.x.
 
@@ -28,11 +28,11 @@ https://xgitlab.cels.anl.gov/codes/codes/wikis/Using-ROSS-Instrumentation-with-C
 Compatible with ROSS version that enables statistics collection of simulation
 performance. For details see:
 
-http://carothersc.github.io/ROSS/instrumentation/instrumentation.html
+http://ross-org.github.io/instrumentation/instrumentation.html
 
 Online workload replay functionality has been added that allows SWM workloads
 to be simulated insitu on the network models. WIP to integrate Conceptual
-domain specific language for network communication.  
+domain specific language for network communication.
 
 Multiple traffic patterns were added in the background traffic generation
 including stencil, all-to-all and random permutation.
@@ -93,7 +93,7 @@ Background network communication using uniform random workload can now be
 generated. The traffic generation gets automatically shut off when the main workload
 finishes.
 
-Collectives can now be translated into point to point using the CoRTex library. 
+Collectives can now be translated into point to point using the CoRTex library.
 
 Performance of MPI_AllReduce is reported when debug_cols option is enabled.
 

doc/codes-best-practices.tex

@@ -121,7 +121,7 @@ xleftmargin=6ex
 % IEEEtran.cls handling of captions and this will result in nonIEEE style
 % figure/table captions. To prevent this problem, be sure and preload
 % caption.sty with its "caption=false" package option. This is will preserve
-% IEEEtran.cls handing of captions. Version 1.3 (2005/06/28) and later 
+% IEEEtran.cls handing of captions. Version 1.3 (2005/06/28) and later
 % (recommended due to many improvements over 1.2) of subfig.sty supports
 % the caption=false option directly:
 %\usepackage[caption=false,font=footnotesize]{subfig}
@@ -188,7 +188,7 @@ easily shared and reused.  It also includes a few tips to help avoid common
 simulation bugs.
 
 For more information, ROSS has a bunch of documentation available in their
-repository/wiki - see \url{https://github.com/carothersc/ROSS}.
+repository/wiki - see \url{https://github.com/ross-org/ROSS}.
 \end{abstract}
 
 \section{CODES: modularizing models}
@@ -394,7 +394,7 @@ action upon the completion of them. More generally, the problem is: an event
 issuance (an ack to the client) is based on the completion of more than one
 asynchronous/parallel events (local write on primary server, forwarding write to
 replica server). Further complicating the matter for storage simulations, there
-can be any number of outstanding requests, each waiting on multiple events. 
+can be any number of outstanding requests, each waiting on multiple events.
 
 In ROSS's sequential and conservative parallel modes, the necessary state can
 easily be stored in the LP as a queue of statuses for each set of events,
@@ -488,7 +488,7 @@ Most core ROSS examples are design to intentionally hit
 the end timestamp for the simulation (i.e. they are modeling a continuous,
 steady state system). This isn't necessarily true for other models. Quite
 simply, set g\_tw\_ts\_end to an arbitrary large number when running simulations
-that have a well-defined end-point in terms of events processed. 
+that have a well-defined end-point in terms of events processed.
 
 Within the LP finalize function, do not call tw\_now. The time returned may not
 be consistent in the case of an optimistic simulation.
@@ -515,7 +515,7 @@ section(s).
         \item generating multiple concurrent events makes rollback more difficult
     \end{enumerate}
 
-    \item use dummy events to work around "event-less" advancement of simulation time 
+    \item use dummy events to work around "event-less" advancement of simulation time
 
     \item add a small amount of time "noise" to events to prevent ties
 

doc/dev/RELEASE-CHECKLIST.txt

@@ -44,7 +44,7 @@ Notes on how to release a new version of CODES
 4. Upload the release tarball
 - Our release directory is at ftp.mcs.anl.gov/pub/CODES/releases . There's no
   web interface, so you have to get onto an MCS workstation and copy the
-  release in that way (the ftp server is mounted at /homes/ftp).
+  release in that way (the ftp server is mounted at /mcs/ftp.mcs.anl.gov).
 
 5. Update website
 - Project wordpress: http://www.mcs.anl.gov/projects/codes/ (you need

doc/example/example.c

@@ -246,7 +246,7 @@ int main(
 
     /* calculate the number of servers in this simulation,
      * ignoring annotations */
-    num_servers = codes_mapping_get_lp_count(group_name, 0, "server", NULL, 1);
+    num_servers = codes_mapping_get_lp_count(group_name, 0, "nw-lp", NULL, 1);
 
     /* for this example, we read from a separate configuration group for
      * server message parameters. Since they are constant for all LPs,
@@ -273,7 +273,7 @@ static void svr_add_lp_type()
 {
     /* lp_type_register should be called exactly once per process per
      * LP type */
-    lp_type_register("server", svr_get_lp_type());
+    lp_type_register("nw-lp", svr_get_lp_type());
 }
 
 static void svr_init(

doc/example/example.conf

@@ -3,14 +3,14 @@
 # of application- and codes-specific key-value pairs. 
 LPGROUPS
 {
-   # in our simulation, we simply have a set of servers, each with 
+   # in our simulation, we simply have a set of servers (nw-lp), each with 
    # point-to-point access to each other
    SERVERS
    {
       # required: number of times to repeat the following key-value pairs
       repetitions="16"; 
       # application-specific: parsed in main
-      server="1";
+      nw-lp="1";
       # model-net-specific field defining the network backend. In this example, 
       # each server has one NIC, and each server are point-to-point connected
       modelnet_simplenet="1";

maint/codes.pc.in

@@ -18,6 +18,7 @@ argobots_libs=@ARGOBOTS_LIBS@
 argobots_cflags=@ARGOBOTS_CFLAGS@
 swm_libs=@SWM_LIBS@
 swm_cflags=@SWM_CFLAGS@
+swm_datarootdir=@SWM_DATAROOTDIR@
 
 Name: codes-base
 Description: Base functionality for CODES storage simulation
@@ -25,4 +26,4 @@ Version: @PACKAGE_VERSION@
 URL: http://trac.mcs.anl.gov/projects/CODES
 Requires:
 Libs: -L${libdir} -lcodes ${ross_libs} ${argobots_libs} ${swm_libs} ${darshan_libs} ${dumpi_libs} ${cortex_libs}
-Cflags: -I${includedir} ${swm_datarootdir} ${ross_cflags} ${darshan_cflags} ${swm_cflags} ${argobots_cflags} ${dumpi_cflags} ${cortex_cflags}
+Cflags: -I${includedir} -I${swm_datarootdir} ${ross_cflags} ${darshan_cflags} ${swm_cflags} ${argobots_cflags} ${dumpi_cflags} ${cortex_cflags}

scripts/allocation_gen/config_alloc-upd.conf

-CONT
-3456
+rand
+1024
 2
 1
-1024 128
+512 512

scripts/allocation_gen/config_alloc.conf

-CONT
-3456
-1024 128
+rand
+1008
+512 496

scripts/dragonfly-plus/dragonfly-plus-topo-gen-v2.py

@@ -4,7 +4,7 @@
 # In hindsight this was a lot more complicated than I intended. It was looking to solve a complex problem that turned out to be invalid from the beginning.
 
 ### USAGE ###
-# Correct usage: python3 script.py <num_groups> <num_spine_pg> <num_leaf_pg> <router_radix> <num_terminal_per_leaf> <intra-file> <inter-file>
+# Correct usage:  python3 dragonfly-plus-topo-gen-v2.py <router_radix> <num_gc_between_groups> <intra-file> <inter-file>
 ###       ###
 
 import sys
@@ -573,37 +573,37 @@ def mainV3():
         print(A.astype(int))
 
 
-def mainV2():
-    if(len(argv) < 8):
-        raise Exception("Correct usage:  python %s <num_groups> <num_spine_pg> <num_leaf_pg> <router_radix> <terminals-per-leaf> <intra-file> <inter-file>" % sys.argv[0])
+# def mainV2():
+#     if(len(argv) < 8):
+#         raise Exception("Correct usage:  python %s <num_groups> <num_spine_pg> <num_leaf_pg> <router_radix> <terminals-per-leaf> <intra-file> <inter-file>" % sys.argv[0])
 
-    num_groups = int(argv[1])
-    num_spine_pg = int(argv[2])
-    num_leaf_pg = int(argv[3])
-    router_radix = int(argv[4])
-    term_per_leaf = int(argv[5])
-    intra_filename = argv[6]
-    inter_filename = argv[7]
+#     num_groups = int(argv[1])
+#     num_spine_pg = int(argv[2])
+#     num_leaf_pg = int(argv[3])
+#     router_radix = int(argv[4])
+#     term_per_leaf = int(argv[5])
+#     intra_filename = argv[6]
+#     inter_filename = argv[7]
 
-    parseOptionArguments()
+#     parseOptionArguments()
 
-    dfp_network = DragonflyPlusNetwork(num_groups, num_spine_pg, num_leaf_pg, router_radix, num_hosts_per_leaf=term_per_leaf)
+#     dfp_network = DragonflyPlusNetwork(num_groups, num_spine_pg, num_leaf_pg, router_radix, num_hosts_per_leaf=term_per_leaf)
 
-    if not DRYRUN:
-        dfp_network.writeIntraconnectionFile(intra_filename)
-        dfp_network.writeInterconnectionFile(inter_filename)
+#     if not DRYRUN:
+#         dfp_network.writeIntraconnectionFile(intra_filename)
+#         dfp_network.writeInterconnectionFile(inter_filename)
 
-    if LOUDNESS is not Loudness.QUIET:
-        print("\nNOTE: THIS STILL CAN'T DO THE MED-LARGE TOPOLOGY RIGHT\n")
+#     if LOUDNESS is not Loudness.QUIET:
+#         print("\nNOTE: THIS STILL CAN'T DO THE MED-LARGE TOPOLOGY RIGHT\n")
 
-        print(dfp_network.getSummary())
+#         print(dfp_network.getSummary())
 
-    if SHOW_ADJACENCY == 1:
-        print("\nPrinting Adjacency Matrix:")
+#     if SHOW_ADJACENCY == 1:
+#         print("\nPrinting Adjacency Matrix:")
 
-        np.set_printoptions(linewidth=400,threshold=10000,edgeitems=200)
-        A = dfp_network.getAdjacencyMatrix(AdjacencyType.ALL_CONNS)
-        print(A.astype(int))
+#         np.set_printoptions(linewidth=400,threshold=10000,edgeitems=200)
+#         A = dfp_network.getAdjacencyMatrix(AdjacencyType.ALL_CONNS)
+#         print(A.astype(int))
 
 if __name__ == '__main__':
     mainV3()

scripts/example/example.template

@@ -3,14 +3,14 @@
 # of application- and codes-specific key-value pairs. 
 LPGROUPS
 {
-   # in our simulation, we simply have a set of servers, each with 
+   # in our simulation, we simply have a set of servers (nw-lp), each with 
    # point-to-point access to each other
    SERVERS
    {
       # required: number of times to repeat the following key-value pairs
       repetitions="C_NUM_SERVERS"; 
       # application-specific: parsed in main
-      server="1";
+      nw-lp="1";
       # model-net-specific field defining the network backend. In this example, 
       # each server has one NIC, and each server are point-to-point connected
       modelnet_simplenet="1";

src/Makefile.subdir

@@ -94,8 +94,9 @@ nobase_include_HEADERS = \
 	codes/connection-manager.h	\
 	codes/net/common-net.h \
 	codes/net/dragonfly.h \
-	codes/net/dragonfly-plus.h	\
 	codes/net/dragonfly-custom.h \
+	codes/net/dragonfly-dally.h \
+	codes/net/dragonfly-plus.h \
 	codes/net/slimfly.h \
 	codes/net/fattree.h \
 	codes/net/loggp.h \
@@ -164,6 +165,7 @@ src_libcodes_la_SOURCES =  \
 	src/networks/model-net/dragonfly.c \
 	src/networks/model-net/dragonfly-custom.C \
 	src/networks/model-net/dragonfly-plus.C \
+	src/networks/model-net/dragonfly-dally.C \
 	src/networks/model-net/slimfly.c \
 	src/networks/model-net/fattree.c \
 	src/networks/model-net/loggp.c \
@@ -198,6 +200,7 @@ bin_PROGRAMS += src/network-workloads/model-net-synthetic-custom-dfly
 bin_PROGRAMS += src/network-workloads/model-net-synthetic-slimfly
 bin_PROGRAMS += src/network-workloads/model-net-synthetic-fattree
 bin_PROGRAMS += src/network-workloads/model-net-synthetic-dfly-plus
+bin_PROGRAMS += src/network-workloads/model-net-synthetic-dally-dfly
 
 
 src_workload_codes_workload_dump_SOURCES = \
@@ -212,6 +215,7 @@ src_network_workloads_model_net_mpi_replay_CFLAGS = $(AM_CFLAGS)
 src_network_workloads_model_net_synthetic_SOURCES = src/network-workloads/model-net-synthetic.c
 src_network_workloads_model_net_synthetic_custom_dfly_SOURCES = src/network-workloads/model-net-synthetic-custom-dfly.c
 src_network_workloads_model_net_synthetic_dfly_plus_SOURCES = src/network-workloads/model-net-synthetic-dfly-plus.c
+src_network_workloads_model_net_synthetic_dally_dfly_SOURCES = src/network-workloads/model-net-synthetic-dally-dfly.c
 src_networks_model_net_topology_test_SOURCES = src/networks/model-net/topology-test.c
 
 #bin_PROGRAMS += src/network-workload/codes-nw-test

src/network-workloads/conf/dragonfly-custom/modelnet-test-dragonfly-1728-nodes.conf.in

@@ -41,7 +41,7 @@ PARAMS
 # bandwidth in GiB/s for compute node-router channels 
    cn_bandwidth="16.0";
 # ROSS message size 
-   message_size="640";
+   message_size="736";
 # number of compute nodes connected to router, dictated by dragonfly config
 # file
    num_cns_per_router="2";

src/network-workloads/conf/dragonfly-plus/modelnet-test-dragonfly-plus.conf → src/network-workloads/conf/dragonfly-dally/dfdally_8k.conf

@@ -2,61 +2,61 @@ LPGROUPS
 {
    MODELNET_GRP
    {
-      repetitions="12";
+      repetitions="1040";
 # name of this lp changes according to the model
-      nw-lp="4";
+      nw-lp="8";
 # these lp names will be the same for dragonfly-custom model
-      modelnet_dragonfly_plus="4";
-      modelnet_dragonfly_plus_router="2";
+      modelnet_dragonfly_dally="8";
+      modelnet_dragonfly_dally_router="1";
    }
 }
 PARAMS
 {
 # packet size in the network
-   packet_size="1024";
-   modelnet_order=( "dragonfly_plus","dragonfly_plus_router" );
+   packet_size="4096";
+   modelnet_order=( "dragonfly_dally","dragonfly_dally_router" );
    # scheduler options
    modelnet_scheduler="fcfs";
 # chunk size in the network (when chunk size = packet size, packets will not be
 # divided into chunks)
-   chunk_size="1024";
+   chunk_size="4096";
    # modelnet_scheduler="round-robin";
-   # number of routers within each group
-   # each router row corresponds to a chassis in Cray systems
-   num_router_spine="4";
-   # each router column corresponds to a slot in a chassis
-   num_router_leaf="4";
-   # number of links connecting between group levels per router
-   num_level_chans="1";
-   # number of groups in the network
-   num_groups="3";
-
-# predefined threshold (T) deciding when to reassign packet to a lower priority queue
-   queue_threshold="50";
 
+   num_router_rows="1";
+   # intra-group columns for routers
+   num_router_cols="16";
+   # number of groups in the network
+   num_groups="65";
 # buffer size in bytes for local virtual channels
-   local_vc_size="8192";
+   local_vc_size="16384";
 #buffer size in bytes for global virtual channels
    global_vc_size="16384";
 #buffer size in bytes for compute node virtual channels
-   cn_vc_size="8192";
+   cn_vc_size="32768";
 #bandwidth in GiB/s for local channels
-   local_bandwidth="5.25";
+   local_bandwidth="2.0";
 # bandwidth in GiB/s for global channels
-   global_bandwidth="1.5";
+   global_bandwidth="2.0";
 # bandwidth in GiB/s for compute node-router channels
-   cn_bandwidth="8.0";
+   cn_bandwidth="2.0";
+# Number of row channels
+   num_row_chans="1";
+# Number of column channels
+   num_col_chans="1";
 # ROSS message size
-   message_size="608";
+   message_size="656";
 # number of compute nodes connected to router, dictated by dragonfly config
 # file
-   num_cns_per_router="4";
+   num_cns_per_router="8";
 # number of global channels per router
-   num_global_connections="4";
+   num_global_channels="8";
 # network config file for intra-group connections
-   intra-group-connections="../src/network-workloads/conf/dragonfly-plus/neil-intra";
+   intra-group-connections="../src/network-workloads/conf/dragonfly-dally/dfdally_8k_intra";
 # network config file for inter-group connections
-   inter-group-connections="../src/network-workloads/conf/dragonfly-plus/neil-inter";
+   inter-group-connections="../src/network-workloads/conf/dragonfly-dally/dfdally_8k_inter";
 # routing protocol to be used
-   routing="minimal";
+   routing="prog-adaptive";
+   adaptive_threshold="131072";
+   minimal-bias="1";
+   df-dally-vc = "1";
 }

src/network-workloads/conf/dragonfly-dally/modelnet-test-dragonfly-dally.conf.in

+LPGROUPS
+{
+   MODELNET_GRP
+   {
+      repetitions="1040";
+# name of this lp changes according to the model
+      nw-lp="8";
+# these lp names will be the same for dragonfly-custom model
+      modelnet_dragonfly_dally="8";
+      modelnet_dragonfly_dally_router="1";
+   }
+}
+PARAMS
+{
+# packet size in the network
+   packet_size="4096";
+   modelnet_order=( "dragonfly_dally","dragonfly_dally_router" );
+   # scheduler options
+   modelnet_scheduler="fcfs";
+# chunk size in the network (when chunk size = packet size, packets will not be
+# divided into chunks)
+   chunk_size="4096";
+   # modelnet_scheduler="round-robin";
+
+   num_router_rows="1";
+   # intra-group columns for routers
+   num_router_cols="16";
+   # number of groups in the network
+   num_groups="65";
+# buffer size in bytes for local virtual channels
+   local_vc_size="16384";
+#buffer size in bytes for global virtual channels
+   global_vc_size="16384";
+#buffer size in bytes for compute node virtual channels
+   cn_vc_size="32768";
+#bandwidth in GiB/s for local channels
+   local_bandwidth="2.0";
+# bandwidth in GiB/s for global channels
+   global_bandwidth="2.0";
+# bandwidth in GiB/s for compute node-router channels
+   cn_bandwidth="2.0";
+# Number of row channels
+   num_row_chans="1";
+# Number of column channels
+   num_col_chans="1";
+# ROSS message size
+   message_size="656";
+# number of compute nodes connected to router, dictated by dragonfly config
+# file
+   num_cns_per_router="8";
+# number of global channels per router
+   num_global_channels="8";
+# network config file for intra-group connections
+   intra-group-connections="@abs_srcdir@/dfdally_8k_intra";
+# network config file for inter-group connections
+   inter-group-connections="@abs_srcdir@/dfdally_8k_inter";
+# routing protocol to be used
+   routing="prog-adaptive";
+   adaptive_threshold="131072";
+   minimal-bias="1";
+   df-dally-vc = "1";
+}

src/network-workloads/conf/dragonfly-plus/dfp_8k.conf

@@ -47,9 +47,9 @@ PARAMS
 # number of global channels per router
    num_global_connections="16";
 # network config file for intra-group connections
-   intra-group-connections="/gpfs/u/home/SPNR/SPNRmcgl/barn/dfp-df-comparisons/experiments/network_configs/dfp_8k_intra";
+   intra-group-connections="../src/network-workloads/conf/dragonfly-plus/dfp_8k_intra";
 # network config file for inter-group connections
-   inter-group-connections="/gpfs/u/home/SPNR/SPNRmcgl/barn/dfp-df-comparisons/experiments/network_configs/dfp_8k_inter";
+   inter-group-connections="../src/network-workloads/conf/dragonfly-plus/dfp_8k_inter";
 # routing protocol to be used - 'minimal', 'non-minimal-spine', 'non-minimal-leaf', 'prog-adaptive'
    routing="prog-adaptive";
 # route scoring protocol to be used - options are 'alpha', 'beta', or 'delta' - 'gamma' has been deprecated

src/network-workloads/conf/dragonfly-plus/modelnet-test-dragonfly-plus.conf.in

+LPGROUPS
+{
+   MODELNET_GRP
+   {
+      repetitions="1056";
+# name of this lp changes according to the model
+      nw-lp="8";
+# these lp names will be the same for dragonfly-custom model
+      modelnet_dragonfly_plus="8";
+      modelnet_dragonfly_plus_router="1";
+   }
+}
+PARAMS
+{
+# packet size in the network
+   packet_size="4096";
+# order of LPs, mapping for modelnet grp
+   modelnet_order=( "dragonfly_plus","dragonfly_plus_router" );
+# scheduler options
+   modelnet_scheduler="fcfs";
+# chunk size in the network (when chunk size = packet size, packets will not be divided into chunks)
+   chunk_size="4096";
+# number of spine routers per group
+   num_router_spine="16";
+# number of leaf routers per group
+   num_router_leaf="16";
+# number of links connecting between group levels per router
+   num_level_chans="1";
+# number of groups in the network
+   num_groups="33";
+# buffer size in bytes for local virtual channels
+   local_vc_size="32768";
+# buffer size in bytes for global virtual channels
+   global_vc_size="32768";
+# buffer size in bytes for compute node virtual channels
+   cn_vc_size="32768";
+# bandwidth in GiB/s for local channels
+   local_bandwidth="25.0";
+# bandwidth in GiB/s for global channels
+   global_bandwidth="25.0";
+# bandwidth in GiB/s for compute node-router channels
+   cn_bandwidth="25.0";
+# ROSS message size
+   message_size="640";
+# number of compute nodes connected to router, dictated by dragonfly config file
+   num_cns_per_router="16";
+# number of global channels per router
+   num_global_connections="16";
+# network config file for intra-group connections
+   intra-group-connections="@abs_srcdir@/dfp_8k_intra";
+# network config file for inter-group connections
+   inter-group-connections="@abs_srcdir@/dfp_8k_inter";
+# routing protocol to be used - 'minimal', 'non-minimal-spine', 'non-minimal-leaf', 'prog-adaptive'
+   routing="prog-adaptive";
+# route scoring protocol to be used - options are 'alpha', 'beta', or 'delta' - 'gamma' has been deprecated
+   route_scoring_metric="delta";
+# minimal route threshold before considering non-minimal paths
+   adaptive_threshold="131072"; #1/16 of 32768
+}
+

src/network-workloads/conf/dual-plane-fattree-tapered.conf

@@ -3,7 +3,7 @@ LPGROUPS
    MODELNET_GRP
    {
       repetitions="198";
-      server="384";
+      nw-lp="384";
       modelnet_fattree="24";
       fattree_switch="6";
    }

src/network-workloads/conf/dual-plane-fattree.conf

@@ -3,7 +3,7 @@ LPGROUPS
    MODELNET_GRP
    {
       repetitions="252";
-      server="288";
+      nw-lp="288";
       modelnet_fattree="18";
       fattree_switch="6";
    }

src/network-workloads/conf/modelnet-mpi-test-dfly-amg-1728.conf

@@ -23,6 +23,6 @@ PARAMS
    local_bandwidth="5.25";
    global_bandwidth="4.7";
    cn_bandwidth="5.25";
-   message_size="608";
+   message_size="656";
    routing="adaptive";
 }

src/network-workloads/conf/modelnet-mpi-test-dfly-amg-216.conf

@@ -23,6 +23,6 @@ PARAMS
    local_bandwidth="5.25";
    global_bandwidth="4.7";
    cn_bandwidth="5.25";
-   message_size="640";
+   message_size="736";
    routing="adaptive";
 }

src/network-workloads/conf/modelnet-mpi-test-fattree.conf

@@ -12,7 +12,7 @@ PARAMS
 {
    ft_type="0";
    packet_size="512";
-   message_size="592";
+   message_size="736";
    chunk_size="512";
    modelnet_scheduler="fcfs";
    #modelnet_scheduler="round-robin";

src/network-workloads/conf/modelnet-mpi-test-slimfly-min.conf

@@ -31,6 +31,6 @@ PARAMS
    cn_bandwidth="9.0";
    router_delay="0";
    link_delay="0";
-   message_size="640";
+   message_size="736";
    routing="minimal";
 }

src/network-workloads/conf/modelnet-mpi-test-torus.conf

@@ -10,7 +10,7 @@ LPGROUPS
 PARAMS
 {
    packet_size="512";
-   message_size="640";
+   message_size="736";
    modelnet_order=( "torus" );
    # scheduler options
    modelnet_scheduler="fcfs";

src/network-workloads/conf/modelnet-synthetic-dragonfly.conf

@@ -3,7 +3,7 @@ LPGROUPS
    MODELNET_GRP
    {
       repetitions="264";
-      server="4";
+      nw-lp="4";
       modelnet_dragonfly="4";
       modelnet_dragonfly_router="1";
    }

src/network-workloads/conf/modelnet-synthetic-fattree-summit-k36-n3564.conf

@@ -3,7 +3,7 @@ LPGROUPS
    MODELNET_GRP
    {
       repetitions="198";     # repetitions = Ne = total # of edge switches. For type0 Ne = Np*Ns = ceil(N/Ns*(k/2))*(k/2) = ceil(N/(k/2)^2)*(k/2)
-      server="18";
+      nw-lp="18";
       modelnet_fattree="18";
       fattree_switch="3";
    }

src/network-workloads/conf/modelnet-synthetic-fattree.conf

@@ -3,7 +3,7 @@ LPGROUPS
    MODELNET_GRP
    {
       repetitions="32";     # repetitions = Ne = total # of edge switches. For type0 Ne = Np*Ns = ceil(N/Ns*(k/2))*(k/2) = ceil(N/(