adding

share/in.lj

+# 3d Lennard-Jones melt
+
+variable	x index 100
+variable	y index 100
+variable	z index 100
+variable  t index 10000
+
+variable	xx equal 20*$x
+variable	yy equal 20*$y
+variable	zz equal 20*$z
+
+units		lj
+atom_style	atomic
+
+lattice		fcc 0.8442
+region		box block 0 ${xx} 0 ${yy} 0 ${zz}
+create_box	1 box
+create_atoms	1 box
+mass		1 1.0
+
+velocity	all create 1.44 87287 loop geom
+
+pair_style	lj/cut 2.5
+pair_coeff	1 1 1.0 1.0 2.5
+
+neighbor	0.3 bin
+neigh_modify	delay 0 every 20 check no
+
+fix		1 all nve
+
+thermo          100
+
+run		$t

share/manifests/basic.json

+{
+	"acKind": "ImageManifest",
+	"acVersion": "0.6.0",
+	"name": "test",
+	"app": {
+		"isolators": [
+			{
+				"name": "argo/scheduler",
+				"value": {
+					"policy": "SCHED_OTHER",
+					"priority": "0"
+				}
+			},
+			{
+				"name": "argo/container",
+				"value": {
+					"cpus": "1",
+					"mems": "1"
+				}
+			},
+			{
+				"name": "argo/perfwrapper",
+				"value": {
+					 "enabled": "0"
+				}
+			},
+			{
+				"name": "argo/power",
+				"value": {
+					"enabled": "0",
+					"profile": "0",
+					"policy": "NONE",
+					"damper": "0.1",
+					"slowdown": "1.1"
+				}
+			}
+		]
+	}
+}

share/manifests/parallel.json

+{
+	"acKind": "ImageManifest",
+	"acVersion": "0.6.0",
+	"name": "test",
+	"app": {
+		"isolators": [
+			{
+				"name": "argo/scheduler",
+				"value": {
+					"policy": "SCHED_OTHER",
+					"priority": "0"
+				}
+			},
+			{
+				"name": "argo/container",
+				"value": {
+					"cpus": "24",
+					"mems": "1"
+				}
+			},
+			{
+				"name": "argo/perfwrapper",
+				"value": {
+					 "enabled": "1"
+				}
+			},
+			{
+				"name": "argo/power",
+				"value": {
+					"enabled": "0",
+					"profile": "0",
+					"policy": "NONE",
+					"damper": "0.1",
+					"slowdown": "1.1"
+				}
+			}
+		]
+	}
+}

share/manifests/perfwrap.json

+{
+	"acKind": "ImageManifest",
+	"acVersion": "0.6.0",
+	"name": "test",
+	"app": {
+		"isolators": [
+			{
+				"name": "argo/scheduler",
+				"value": {
+					"policy": "SCHED_OTHER",
+					"priority": "0"
+				}
+			},
+			{
+				"name": "argo/container",
+				"value": {
+					"cpus": "1",
+					"mems": "1"
+				}
+			},
+			{
+				"name": "argo/perfwrapper",
+				"value": {
+					 "enabled": "1"
+				}
+			},
+			{
+				"name": "argo/power",
+				"value": {
+					"enabled": "0",
+					"profile": "0",
+					"policy": "NONE",
+					"damper": "0.1",
+					"slowdown": "1.1"
+				}
+			}
+		]
+	}
+}

share/modified.lj

+# 3d Lennard-Jones melt
+
+variable	x index 100000
+variable	y index 100000
+variable	z index 100000
+variable  t index 10000
+
+variable	xx equal 20*$x
+variable	yy equal 20*$y
+variable	zz equal 20*$z
+
+units		lj
+atom_style	atomic
+
+lattice		fcc 0.8442
+region		box block 0 ${xx} 0 ${yy} 0 ${zz}
+create_box	1 box
+create_atoms	1 box
+mass		1 1.0
+
+velocity	all create 1.44 87287 loop geom
+
+pair_style	lj/cut 2.5
+pair_coeff	1 1 1.0 1.0 2.5
+
+neighbor	0.3 bin
+neigh_modify	delay 0 every 20 check no
+
+fix		1 all nve
+
+thermo          100
+
+run		$t

src/Argo/Args.hs

@@ -19,7 +19,7 @@ data StackArgs = StackArgs
   , args                   :: [AppArg]
   , containerName          :: ContainerName
   , workingDirectory       :: WorkingDirectory
-  , manifestDir            :: ManifestDir
+  , shareDir            :: ShareDir
   , manifestName           :: ManifestName
   , daemon                 :: ProcessBehavior
   , cmdrun                 :: ProcessBehavior
@@ -35,7 +35,7 @@ newtype AppArg = AppArg Text deriving (IsString, Show, Read)
 newtype WorkingDirectory = WorkingDirectory FilePath deriving (IsString, Show)
 newtype AppName = AppName Text deriving (IsString, Show, Read)
 newtype ContainerName = ContainerName Text deriving (IsString, Show, Read)
-newtype ManifestDir = ManifestDir FilePath deriving (IsString, Show)
+newtype ShareDir = ShareDir FilePath deriving (IsString, Show)
 newtype ManifestName = ManifestName FilePath deriving (IsString, Show)
 data ProcessBehavior =
      Test TestText StdOutLog StdErrLog
@@ -63,7 +63,7 @@ instance Default StackArgs where
     , args = []
     , containerName = ContainerName "testContainer"
     , workingDirectory = WorkingDirectory "_output"
-    , manifestDir = ManifestDir "manifests"
+    , shareDir = ShareDir "/tmp"
     , manifestName = ManifestName "basic.json"
     , daemon = DontRun
     , cmdrun = DontRun
@@ -100,12 +100,12 @@ parseExtendStackArgs sa = do
     <> showDefault
     <> value (workingDirectory sa)
     )
-  manifestDir <- strOption
+  shareDir <- strOption
     (  long "manifest_directory"
     <> metavar "DIR"
     <> help "Manifest lookup directory"
     <> showDefault
-    <> value (manifestDir sa)
+    <> value (shareDir sa)
     )
   manifestName <- strOption
     (  long "manifest_name"

src/Argo/Stack.hs

@@ -114,15 +114,15 @@ cmdRunI
   :: AppName
   -> [AppArg]
   -> ContainerName
-  -> ManifestDir
+  -> ShareDir
   -> ManifestName
   -> ProcessBehavior
   -> Maybe (StackI, Instrumentation)
-cmdRunI (AppName app) args (ContainerName cn) (ManifestDir md) (ManifestName mn) pb
+cmdRunI (AppName app) args (ContainerName cn) (ShareDir md) (ManifestName mn) pb
   = Just (Run, )
     <*> processBehaviorToI
           (  P.proc "cmd"
-          $  ["run", "-u", T.unpack cn, encodeString $ md </> mn, T.unpack app]
+          $  ["run", "-u", T.unpack cn, encodeString $ md <> "manifests" </> mn, T.unpack app]
           ++ fmap (T.unpack . argToText) args
           )
           pb
@@ -202,7 +202,7 @@ runStack sa@StackArgs {..} = do
 
   let milist =
         [ iDaemon
-        , cmdRunI app args containerName manifestDir manifestName cmdrun
+        , cmdRunI app args containerName shareDir manifestName cmdrun
         , cmdListenI containerName cmdlisten
         , cmdListenPerformanceI containerName cmdlistenperformance
         , cmdListenProgressI containerName cmdlistenprogress

src/argotk.hs

@@ -213,8 +213,8 @@ configureTest = \case
       { stackArgsUpdate = \sa -> sa
         { app                  = AppName "mpirun"
         , args                 =
-          let (ManifestDir dirn) = manifestDir sa
-              Right inpath = toText (dirn </> "in.lj")
+          let (ShareDir dirn)  = shareDir sa
+              Right inpath = toText (dirn </> "modified.lj")
            in [ AppArg "-n"
               , AppArg "24"
               , AppArg "lmp_mpi"
@@ -313,7 +313,6 @@ clean StackArgs {..} = cleanLeftovers workingDirectory
 main :: IO ()
 main = do
   argonixShare <- getEnv "ARGONIX_SHARE"
-  let manifests = argonixShare ++ "/manifests"
-  let a = def { manifestDir = ManifestDir $ decodeString manifests }
+  let a = def { shareDir = ShareDir $ decodeString argonixShare }
   turtle <- execParser (info (opts a <**> helper) idm)
   sh turtle