worked on dhrun tests.

dhrun/all-tests.dh

@@ -30,6 +30,7 @@ in  let apps =
                     , lib.qmcPackDir ++ "/simple-H2O.xml"
                     ]
                   ⫽ argIfTest isTest
+                  ⫽ { cmdavoids = [ "Error", "error", "ERROR" ] }
                 )
           , lammps =
                 λ(isTest : Bool)
@@ -45,6 +46,7 @@ in  let apps =
                     , lib.lammpsDir ++ "/modified.lj"
                     ]
                   ⫽ argIfTest isTest
+                  ⫽ { cmdavoids = [ "Error", "error", "ERROR" ] }
                 )
           , openmc =
                 λ(isTest : Bool)
@@ -53,9 +55,15 @@ in  let apps =
                       "mpiexec"
                       [ "-n", if isTest then "2" else "24", "openmc" ]
                     ⫽ argIfTest isTest
-                    ⫽ { passvars = [ "OPENMC_CROSS_SECTIONS" ] }
+                    ⫽ { passvars =
+                          [ "OPENMC_CROSS_SECTIONS" ]
+                      , cmdavoids =
+                          [ "Error", "error", "ERROR" ]
+                      }
                   )
-                ⫽ { pre = [ "cp -r " ++ lib.openmcDir ++ " ." ] }
+                ⫽ { pre =
+                      [ "cp --no-preserve=mode -r " ++ lib.openmcDir ++ "/* ." ]
+                  }
           , amg =
                 λ(isTest : Bool)
               → lib.progressAppTest
@@ -79,7 +87,7 @@ in  let apps =
                   ⫽ { vars =
                         [ { varname = "OMP_NUM_THREADS", value = "1" } ]
                     , cmdavoids =
-                        [ "Error" ]
+                        [ "Error", "error", "ERROR" ]
                     }
                 )
           , stream =
@@ -95,6 +103,8 @@ in  let apps =
                           }
                         , { varname = "OMP_PLACES", value = "cores" }
                         ]
+                    , cmdavoids =
+                        [ "Error", "error", "ERROR" ]
                     }
                 )
           }

dhrun/lib.dh

@@ -42,7 +42,7 @@ in  let basicCommand =
                 { filename =
                     "${args.outprefix}.err"
                 , filecheck =
-                    values.emptyCheck
+                    values.emptyCheck ⫽ { avoids = args.outavoids }
                 }
             , postchecks =
                 [] : List types.FileCheck

pkgs/default.nix

@@ -391,7 +391,16 @@ let
     testQMCPack     = doDhrun (test.overrideAttrs
       (old:{buildInputs=old.buildInputs++[ qmcpack ];})) "qmcpack";
     testAll         = doDhrun (test.overrideAttrs
-      (old:{OPENMC_CROSS_SECTIONS = "${openmc-data}/cross_sections.xml";})) "tests";
+    (old:{
+      buildInputs = old.buildInputs ++ [
+        lammps
+        qmcpack
+        openmc
+        stream
+        amg
+        openmc-data
+      ];
+      OPENMC_CROSS_SECTIONS = "${openmc-data}/cross_sections.xml";})) "tests";
   };
 # re-exporting a full nixpkgs-like package set
 in pkgs // argopkgs