default.nix 9.77 KB
Newer Older
Valentin Reis's avatar
Valentin Reis committed
1
{ # host package set (unused except for fetching nixpkgs)
Valentin Reis's avatar
Valentin Reis committed
2
  hostPkgs         ? import <nixpkgs> {}
Valentin Reis's avatar
Valentin Reis committed
3
4

, # versioned nixpkgs
Valentin Reis's avatar
Valentin Reis committed
5
  pkgs             ? import (hostPkgs.nix-update-source.fetch ./pkgs.json).src {}
Valentin Reis's avatar
Valentin Reis committed
6

Valentin Reis's avatar
Valentin Reis committed
7
, # versioned nixpkgs-older version for zmcat
Valentin Reis's avatar
Valentin Reis committed
8
  pkgs-old         ? import (hostPkgs.nix-update-source.fetch ./pkgs-old.json).src {}
Valentin Reis's avatar
Valentin Reis committed
9

Valentin Reis's avatar
Valentin Reis committed
10
, # fetcher alias for the remaining arguments
Valentin Reis's avatar
Valentin Reis committed
11
  fetched          ? s: (pkgs.nix-update-source.fetch s).src
Valentin Reis's avatar
Valentin Reis committed
12
13

, #source overrides: core nrm components
Valentin Reis's avatar
Valentin Reis committed
14
  aml-src          ? fetched aml/pin.json
Valentin Reis's avatar
Valentin Reis committed
15
, numabench-src    ? fetched numabench/pin.json
Valentin Reis's avatar
Valentin Reis committed
16
, excit-src        ? fetched excit/pin.json
Valentin Reis's avatar
Valentin Reis committed
17
18
19
, libnrm-src       ? fetched libnrm/pin.json
, nrm-src          ? fetched nrm/pin.json
, containers-src   ? fetched containers/pin.json
Valentin Reis's avatar
Valentin Reis committed
20
21

, #source overrides: applications
Valentin Reis's avatar
Valentin Reis committed
22
23
24
25
26
  amg-src          ? fetched amg/pin.json
, qmcpack-src      ? fetched qmcpack/pin.json
, openmc-src       ? fetched openmc/pin.json
, stream-src       ? fetched stream/pin.json
, lammps-src       ? fetched lammps/pin.json
Valentin Reis's avatar
Valentin Reis committed
27

Valentin Reis's avatar
Valentin Reis committed
28
, #source overrides: tooling
29
30
31
  argotk-src       ? builtins.fetchGit {inherit (fetched argotk/pin.json) url rev;}
, repoquality-src  ? builtins.fetchGit {inherit (fetched repoquality/pin.json) url rev;}
, argonix-src      ? builtins.fetchGit {inherit (fetched argonix/pin.json) url rev;}
Valentin Reis's avatar
Valentin Reis committed
32
, experiments-src  ? fetched experiments/pin.json
33
34

, #used for hardware experiments.
Valentin Reis's avatar
Valentin Reis committed
35
  sudoPath         ? null
Valentin Reis's avatar
Valentin Reis committed
36

Valentin Reis's avatar
Valentin Reis committed
37
38
, #whether to graft apps on libnrm.
  graftLibnrm      ? false
Valentin Reis's avatar
.  
Valentin Reis committed
39
40
}:
let
Valentin Reis's avatar
Valentin Reis committed
41
  callPackage = pkgs.lib.callPackageWith (pkgs // argopkgs);
42

Valentin Reis's avatar
Valentin Reis committed
43
  argopkgs = rec {
44
    # library of nix expressions
Valentin Reis's avatar
style.    
Valentin Reis committed
45
    argolib       = import ../lib/utils.nix;
46
    # Argo components (source overridabel via argument)
Valentin Reis's avatar
Valentin Reis committed
47
    aml           = callPackage ./aml        {src=aml-src; inherit excit; inherit numabench;};
Valentin Reis's avatar
Valentin Reis committed
48
    numabench     = callPackage ./numabench  {src=numabench-src; hwloc = hwloc2;};
Valentin Reis's avatar
Valentin Reis committed
49
    excit         = callPackage ./excit      {src=excit-src;};
Valentin Reis's avatar
Valentin Reis committed
50
51
52
53
54
    nrm           = callPackage ./nrm        {src=nrm-src;};
    containers    = callPackage ./containers {src=containers-src;};
    libnrm        = callPackage ./libnrm     {src=libnrm-src;};
    libnrm-pinned = callPackage ./libnrm     {src=fetched libnrm/pin.json;};
    libnrm-pmpi   = libnrm.overrideAttrs (oldAttrs: rec {
Valentin Reis's avatar
Valentin Reis committed
55
56
57
      configureFlags = "--enable-pmpi";
      buildInputs = oldAttrs.buildInputs ++ [ pkgs.mpich2 ];
    });
58

Valentin Reis's avatar
Valentin Reis committed
59
60
    numabench-check = numabench.overrideAttrs(old: {
      buildPhase = "make check";
61
      installPhase =''
62
63
64
65
        mkdir -p $out/tests
        cp ./tests/*.log $out/tests
        cp ./tests/*.trs $out/tests
        cp -r ./tests/tmp.trs $out/tests
66
        '';
Valentin Reis's avatar
Valentin Reis committed
67
68
69
70
71
    });
    excit-check = excit.overrideAttrs(old: {
      buildPhase = "make check";
    });

Valentin Reis's avatar
Valentin Reis committed
72
73
74
    # applications with replaceDependency for libnrm.
    repLibnrm = path: src: extra:
    let
Valentin Reis's avatar
Valentin Reis committed
75
      drv = callPackage path ({
Valentin Reis's avatar
style.    
Valentin Reis committed
76
77
78
        nrmSupport = true;
        src = src;
        libnrm = libnrm-pinned;
Valentin Reis's avatar
Valentin Reis committed
79
      }//extra);
Valentin Reis's avatar
style.    
Valentin Reis committed
80
      rebuilt = drv.override {libnrm = libnrm;};
Valentin Reis's avatar
Valentin Reis committed
81
82
83
84
85
86
      grafted = pkgs.replaceDependency {
        drv = drv;
        oldDependency = libnrm-pinned;
        newDependency = libnrm;
      };
    in if graftLibnrm then grafted else rebuilt;
Valentin Reis's avatar
Valentin Reis committed
87
88
89
90
    amg          = repLibnrm ./amg     amg-src     {};
    qmcpack      = repLibnrm ./qmcpack qmcpack-src {};
    openmc       = repLibnrm ./openmc  openmc-src  {};
    lammps       = repLibnrm ./lammps  lammps-src  {};
Valentin Reis's avatar
Valentin Reis committed
91
    stream       = repLibnrm ./stream  stream-src  {iterationCount="2000";};
Valentin Reis's avatar
Valentin Reis committed
92

93
    # data (static, non source overridable via arguments)
Valentin Reis's avatar
Valentin Reis committed
94
    openmc-data = fetched openmc/data.json;
Valentin Reis's avatar
Valentin Reis committed
95

96
97
98
99
    # tools
    zymake = callPackage ./zymake {
      inherit (pkgs.ocamlPackages) findlib ocamlbuild topkg batteries;
    };
Valentin Reis's avatar
Valentin Reis committed
100
101
    haskellPackages = pkgs.haskellPackages.override {
      overrides = self: super: with pkgs.haskell.lib;
Valentin Reis's avatar
Valentin Reis committed
102
      rec {
Valentin Reis's avatar
Valentin Reis committed
103
        panpipe        = (pkgs.haskell.lib.doJailbreak super.panpipe);
Valentin Reis's avatar
Valentin Reis committed
104
        spdx           = (pkgs.haskell.lib.doJailbreak super.spdx);
Valentin Reis's avatar
Valentin Reis committed
105
        generic-pretty = doJailbreak super.generic-pretty;
Valentin Reis's avatar
Valentin Reis committed
106

Valentin Reis's avatar
Valentin Reis committed
107
108
109
110
111
        #minor cabal and version fix
        panhandle    = (self.callCabal2nix "panhandle" (builtins.fetchGit {
                      inherit (panhandle-src) url rev; })) {};

        #argo tools
Valentin Reis's avatar
Valentin Reis committed
112
113
114
        argotk = (self.callCabal2nix "argotk" argotk-src) {};
        argonix = (self.callCabal2nix "argonix" argonix-src) {};
        repoquality = (self.callCabal2nix "repoquality" repoquality-src) {};
115
      };
Valentin Reis's avatar
Valentin Reis committed
116
    };
Valentin Reis's avatar
Valentin Reis committed
117

118
    # re-export from hpkgs and add non-haskell build rule specialization
Valentin Reis's avatar
Valentin Reis committed
119
120
121
    inherit (haskellPackages) repoquality;

    argotk = haskellPackages.argotk.overrideAttrs (old:{
Valentin Reis's avatar
Valentin Reis committed
122
123
124
125
126
127
128
129
130
131
132
133
        buildInputs=old.buildInputs ++ [pkgs.hwloc];
        installPhase = old.installPhase + ''
          mkdir $out/share/
          ARGOTK_SHARE=share $out/bin/argotk --bash-completion-script argotk > $out/share/argotk.sh
          cp -r share/* $out/share/
          substituteInPlace $out/share/simple-H2O.xml --replace \
                H2O.HF.wfs.xml $out/share/H2O.HF.wfs.xml
          substituteInPlace $out/share/simple-H2O.xml --replace \
                O.BFD.xml $out/share/O.BFD.xml
          substituteInPlace $out/share/simple-H2O.xml --replace \
                H.BFD.xml $out/share/H.BFD.xml
        '';
Valentin Reis's avatar
Valentin Reis committed
134
135
136
137
138
139
140
141
      });

    argonix = haskellPackages.argonix.overrideAttrs (old:{
        installPhase = old.installPhase + ''
          mkdir $out/share/
          $out/bin/argonix --bash-completion-script argonix > $out/share/argonix.sh
        '';
      });
142

143
    # fix for nrm
Valentin Reis's avatar
Valentin Reis committed
144
    pyzmq = pkgs.pythonPackages.pyzmq.override { zeromq3 = pkgs.zeromq; };
Valentin Reis's avatar
Valentin Reis committed
145

Valentin Reis's avatar
Valentin Reis committed
146
147
148
149
150
151
152
    hwloc2 = pkgs.hwloc.overrideAttrs (old:{
      src = pkgs.fetchurl {
        url = "https://download.open-mpi.org/release/hwloc/v2.0/hwloc-2.0.3.tar.gz";
        sha256 = "0707ml34ylrr8zwwhddp64q6q57248m9646f27jadcx5m93g5pk4";
      };
    });

153
    # archived for sake of the simplicity of this file
Valentin Reis's avatar
Valentin Reis committed
154
155
    zmcat = pkgs-old.haskellPackages.callPackage ./zmcat {};
    zmqat = pkgs-old.haskellPackages.zmqat;
156

157
    # ci/experimental environments
Valentin Reis's avatar
Valentin Reis committed
158
159
    test = pkgs.stdenv.mkDerivation rec {
      name = "testEnv";
160

Valentin Reis's avatar
Valentin Reis committed
161
162
163
164
165
166
167
168
169
170
171
172
173
174
      buildInputs = [
        # argotk runs mpiexec:
        pkgs.mpich2
        # argotk uses hwloc to choose CPU counts:
        pkgs.hwloc
        # these are needed for some reason:
        pkgs.coreutils
        pkgs.utillinux
        pkgs.git
        # argo tools
        argotk
        # argo components
        containers
        nrm
Valentin Reis's avatar
Valentin Reis committed
175
      ];
176

Valentin Reis's avatar
Valentin Reis committed
177
      #required to be able to build the drv.
178
      installPhase = "mkdir $out";
Valentin Reis's avatar
Valentin Reis committed
179
      unpackPhase = "true";
Valentin Reis's avatar
Valentin Reis committed
180

181
182
183
184
185
186
187
      __noChroot = true;
      shellHook =''
        echo ""
        echo "ENTERING ENVIRONMENT: Sources of impurity for this build are: /tmp/ /etc/argo/ /var/run/ /var/lock/".
        echo "ENTERING ENVIRONMENT: Moreover, sandboxing is disabled, in particular because of:"
        echo "ENTERING ENVIRONMENT: /tmp/nrm-* sockets, /etc/argo, /var/run/, /var/lock/ which all need read access. "
        echo "ENTERING ENVIRONMENT: until these components are patched to allow for alternative paths, no sandbox use is possible."
188
        source ${argotk}/share/argotk.sh # bash completion
189
        echo ""
190
      '';
191
      #argotk uses this environment variable.
192
      ARGOTK_SHARE = "${argotk}/share";
Valentin Reis's avatar
Valentin Reis committed
193
194
      OPENMC_CROSS_SECTIONS = "${openmc-data}/cross_sections.xml";
      OPENMC_PWD = "${argotk}/share/openmc";
Valentin Reis's avatar
Valentin Reis committed
195
    };
Valentin Reis's avatar
Valentin Reis committed
196

Valentin Reis's avatar
Valentin Reis committed
197
    testApplications = test.overrideAttrs (old:{
Valentin Reis's avatar
Valentin Reis committed
198
      name = "testEnv-with-applications";
199
      buildInputs = old.buildInputs ++ [
Valentin Reis's avatar
Valentin Reis committed
200
201
202
203
204
205
206
207
        lammps
        qmcpack
        openmc
        stream
        amg
        openmc-data
      ];
    });
Valentin Reis's avatar
Valentin Reis committed
208

209
    powerexpe = testApplications.overrideAttrs (old:{
Valentin Reis's avatar
Valentin Reis committed
210
211
      name = "power-experiments";
      buildInputs = old.buildInputs ++ [
212
213
        #debug tools
        pkgs.which
Valentin Reis's avatar
Valentin Reis committed
214
        #pkgs.sudo
Valentin Reis's avatar
Valentin Reis committed
215
        zmcat
216
217
218

        #experiment tools
        zymake
219
      ];
Valentin Reis's avatar
Valentin Reis committed
220
      buildPhase = "zymake ${experiments-src}/experiments/zymakefile";
Valentin Reis's avatar
Valentin Reis committed
221
222
223
224
      installPhase = ''
        mkdir -p $out
        cp -r o/* $out
      '';
Valentin Reis's avatar
Valentin Reis committed
225
    });
Valentin Reis's avatar
Valentin Reis committed
226

Valentin Reis's avatar
Valentin Reis committed
227
228
229
230
231
    analysis = pkgs.stdenv.mkDerivation rec {
      name = "analysis";
      src = experiments-src;

      #required to be able to build the drv.
Valentin Reis's avatar
Valentin Reis committed
232
233
234
      installPhase = ''
        mkdir -p $out
      '';
Valentin Reis's avatar
Valentin Reis committed
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
      unpackPhase = "true";

      buildInputs = [
        (pkgs.rWrapper.override{ packages = with pkgs.rPackages; [
          pkgs.rlwrap
          pkgs.pandoc
          docopt
          formatR
          purrr
          knitr
          cowplot
          plotly
          lubridate
          dplyr
          ggplot2
          xtable
          ggthemes
          data_table
        ];})
      ];
    };

    report = analysis.overrideAttrs (old:{
      buildPhase = ''
259
260
        echo "analysis/zymakefolder.R ${powerexpe}"
        analysis/zymakefolder.R ${powerexpe}
Valentin Reis's avatar
Valentin Reis committed
261
262
263
264
265
266
      '';
      installPhase = ''
        mkdir -p $out
        cp -r index* $out
      '';
    });
267

268
    doArgotk = drv: command: drv.overrideAttrs (old:{
Valentin Reis's avatar
Valentin Reis committed
269
      buildPhase = "argotk "+command+" --verbose";
Valentin Reis's avatar
Valentin Reis committed
270
      installPhase = ''
Valentin Reis's avatar
Valentin Reis committed
271
        mkdir -p $out
Valentin Reis's avatar
Valentin Reis committed
272
273
274
        cp _output/* $out/
      '';
    });
275
276
277
278
    testHello       = doArgotk test "TestHello";
    testListen      = doArgotk test "TestListen";
    testPerfwrapper = doArgotk test "TestPerfwrapper";
    testPower       = doArgotk test "TestPower";
279
280
281
282
283
    testSTREAM      = doArgotk (test.overrideAttrs (old:{buildInputs=old.buildInputs++[ stream ];})) "TestSTREAM";
    testAMG         = doArgotk (test.overrideAttrs (old:{buildInputs=old.buildInputs++[ amg ];})) "TestAMG";
    testOpenMC      = doArgotk (test.overrideAttrs (old:{buildInputs=old.buildInputs++[ openmc ];})) "TestOpenMC";
    testLAMMPS      = doArgotk (test.overrideAttrs (old:{buildInputs=old.buildInputs++[ lammps ];})) "TestLAMMPS";
    testQMCPack     = doArgotk (test.overrideAttrs (old:{buildInputs=old.buildInputs++[ qmcpack ];})) "TestQMCPack";
284
    testAll         = doArgotk test "tests";
Valentin Reis's avatar
Valentin Reis committed
285

286
  };
287
# re-exporting a full nixpkgs-like package set
288
in pkgs // argopkgs