default.nix 12.7 KB
Newer Older
Valentin Reis's avatar
Valentin Reis committed
1
{ # host package set (unused except for fetching nixpkgs)
Valentin Reis's avatar
Valentin Reis committed
2
  hostPkgs         ? import <nixpkgs> {}
Valentin Reis's avatar
Valentin Reis committed
3 4

, # versioned nixpkgs
Valentin Reis's avatar
Valentin Reis committed
5
  pkgs             ? import (hostPkgs.nix-update-source.fetch ./pkgs.json).src {}
Valentin Reis's avatar
Valentin Reis committed
6

Valentin Reis's avatar
Valentin Reis committed
7
, # versioned nixpkgs-older version for zmcat
Valentin Reis's avatar
Valentin Reis committed
8
  pkgs-old         ? import (hostPkgs.nix-update-source.fetch ./pkgs-old.json).src {}
Valentin Reis's avatar
Valentin Reis committed
9

Valentin Reis's avatar
Valentin Reis committed
10
, # fetcher alias for the remaining arguments
Valentin Reis's avatar
Valentin Reis committed
11
  fetched          ? s: (pkgs.nix-update-source.fetch s).src
Valentin Reis's avatar
Valentin Reis committed
12 13

, #source overrides: core nrm components
Valentin Reis's avatar
Valentin Reis committed
14
  aml-src          ? fetched aml/pin.json
Valentin Reis's avatar
Valentin Reis committed
15
, numabench-src    ? fetched numabench/pin.json
Valentin Reis's avatar
Valentin Reis committed
16
, excit-src        ? fetched excit/pin.json
Valentin Reis's avatar
Valentin Reis committed
17 18 19
, libnrm-src       ? fetched libnrm/pin.json
, nrm-src          ? fetched nrm/pin.json
, containers-src   ? fetched containers/pin.json
Valentin Reis's avatar
Valentin Reis committed
20 21

, #source overrides: applications
Valentin Reis's avatar
Valentin Reis committed
22 23 24 25 26
  amg-src          ? fetched amg/pin.json
, qmcpack-src      ? fetched qmcpack/pin.json
, openmc-src       ? fetched openmc/pin.json
, stream-src       ? fetched stream/pin.json
, lammps-src       ? fetched lammps/pin.json
Valentin Reis's avatar
Valentin Reis committed
27

Valentin Reis's avatar
Valentin Reis committed
28
  #source overrides: tooling
29
, repoquality-src  ? builtins.fetchGit {inherit (fetched repoquality/pin.json) url rev;}
Valentin Reis's avatar
Valentin Reis committed
30
, dhrun-src        ? builtins.fetchGit {inherit (fetched dhrun/pin.json) url rev;}
Valentin Reis's avatar
Valentin Reis committed
31
, powerplots-src   ? builtins.fetchGit {inherit (fetched powerplots/pin.json) url rev;}
32
, argonix-src      ? builtins.fetchGit {inherit (fetched argonix/pin.json) url rev;}
Valentin Reis's avatar
Valentin Reis committed
33
, experiments-src  ? fetched experiments/pin.json
34 35

, #used for hardware experiments.
Valentin Reis's avatar
Valentin Reis committed
36
  sudoPath         ? null
Valentin Reis's avatar
Valentin Reis committed
37

Valentin Reis's avatar
Valentin Reis committed
38 39
, #whether to graft apps on libnrm.
  graftLibnrm      ? false
Valentin Reis's avatar
.  
Valentin Reis committed
40 41
}:
let
Valentin Reis's avatar
Valentin Reis committed
42
  callPackage = pkgs.lib.callPackageWith (pkgs // argopkgs);
43

Valentin Reis's avatar
Valentin Reis committed
44
  argopkgs = rec {
45
    # library of nix expressions
Valentin Reis's avatar
style.  
Valentin Reis committed
46
    argolib       = import ../lib/utils.nix;
47
    # Argo components (source overridabel via argument)
Valentin Reis's avatar
Valentin Reis committed
48
    aml           = callPackage ./aml        {src=aml-src; inherit excit; inherit numabench;};
Valentin Reis's avatar
Valentin Reis committed
49
    numabench     = callPackage ./numabench  {src=numabench-src; hwloc = hwloc2;};
Valentin Reis's avatar
Valentin Reis committed
50
    excit         = callPackage ./excit      {src=excit-src;};
Valentin Reis's avatar
Valentin Reis committed
51 52 53 54 55
    nrm           = callPackage ./nrm        {src=nrm-src;};
    containers    = callPackage ./containers {src=containers-src;};
    libnrm        = callPackage ./libnrm     {src=libnrm-src;};
    libnrm-pinned = callPackage ./libnrm     {src=fetched libnrm/pin.json;};
    libnrm-pmpi   = libnrm.overrideAttrs (oldAttrs: rec {
Valentin Reis's avatar
Valentin Reis committed
56 57 58
      configureFlags = "--enable-pmpi";
      buildInputs = oldAttrs.buildInputs ++ [ pkgs.mpich2 ];
    });
59

Valentin Reis's avatar
Valentin Reis committed
60 61
    numabench-check = numabench.overrideAttrs(old: {
      buildPhase = "make check";
62
      installPhase =''
63 64 65
        mkdir -p $out/tests
        cp ./tests/*.log $out/tests
        cp ./tests/*.trs $out/tests
Valentin Reis's avatar
Valentin Reis committed
66
        cp -r ./tests/tmp $out/tests
67
        '';
Valentin Reis's avatar
Valentin Reis committed
68 69 70 71 72
    });
    excit-check = excit.overrideAttrs(old: {
      buildPhase = "make check";
    });

Valentin Reis's avatar
Valentin Reis committed
73 74 75
    # applications with replaceDependency for libnrm.
    repLibnrm = path: src: extra:
    let
Valentin Reis's avatar
Valentin Reis committed
76
      drv = callPackage path ({
Valentin Reis's avatar
style.  
Valentin Reis committed
77 78 79
        nrmSupport = true;
        src = src;
        libnrm = libnrm-pinned;
Valentin Reis's avatar
Valentin Reis committed
80
      }//extra);
Valentin Reis's avatar
style.  
Valentin Reis committed
81
      rebuilt = drv.override {libnrm = libnrm;};
Valentin Reis's avatar
Valentin Reis committed
82 83 84 85 86 87
      grafted = pkgs.replaceDependency {
        drv = drv;
        oldDependency = libnrm-pinned;
        newDependency = libnrm;
      };
    in if graftLibnrm then grafted else rebuilt;
Valentin Reis's avatar
Valentin Reis committed
88 89 90 91
    amg          = repLibnrm ./amg     amg-src     {};
    qmcpack      = repLibnrm ./qmcpack qmcpack-src {};
    openmc       = repLibnrm ./openmc  openmc-src  {};
    lammps       = repLibnrm ./lammps  lammps-src  {};
Valentin Reis's avatar
Valentin Reis committed
92
    stream       = repLibnrm ./stream  stream-src  {iterationCount="2000";};
Valentin Reis's avatar
Valentin Reis committed
93

94
    # data (static, non source overridable via arguments)
Valentin Reis's avatar
Valentin Reis committed
95
    openmc-data = fetched openmc/data.json;
Valentin Reis's avatar
Valentin Reis committed
96

97
    # tools
98
    checkpatch = callPackage ./checkpatch {src=pkgs.linux_testing.src;};
99 100 101
    zymake = callPackage ./zymake {
      inherit (pkgs.ocamlPackages) findlib ocamlbuild topkg batteries;
    };
Valentin Reis's avatar
Valentin Reis committed
102 103
    haskellPackages = pkgs.haskellPackages.override {
      overrides = self: super: with pkgs.haskell.lib;
Valentin Reis's avatar
Valentin Reis committed
104
      rec {
Valentin Reis's avatar
Valentin Reis committed
105
        panpipe        = (pkgs.haskell.lib.doJailbreak super.panpipe);
Valentin Reis's avatar
Valentin Reis committed
106
        spdx           = (pkgs.haskell.lib.doJailbreak super.spdx);
Valentin Reis's avatar
Valentin Reis committed
107
        monad-mock     = (pkgs.haskell.lib.doJailbreak super.monad-mock);
Valentin Reis's avatar
Valentin Reis committed
108
        generic-pretty = doJailbreak super.generic-pretty;
Valentin Reis's avatar
Valentin Reis committed
109

Valentin Reis's avatar
Valentin Reis committed
110 111 112
        #minor cabal and version fix
        panhandle    = (self.callCabal2nix "panhandle" (builtins.fetchGit {
                      inherit (panhandle-src) url rev; })) {};
Valentin Reis's avatar
Valentin Reis committed
113 114 115
        inline-r = dontCheck super.inline-r;
        argonix     = (self.callCabal2nix "argonix"     argonix-src     ) {};
        repoquality = (self.callCabal2nix "repoquality" repoquality-src ) {};
Valentin Reis's avatar
Valentin Reis committed
116
        dhrun       = (self.callCabal2nix "dhrun"       dhrun-src ) {};
Valentin Reis's avatar
Valentin Reis committed
117 118
        powerplots  = (self.callCabal2nix "powerplots"  powerplots-src  ) {};

119
      };
Valentin Reis's avatar
Valentin Reis committed
120
    };
Valentin Reis's avatar
Valentin Reis committed
121

122
    # re-export from hpkgs and add non-haskell build rule specialization
Valentin Reis's avatar
Valentin Reis committed
123
    inherit (haskellPackages) repoquality;
Valentin Reis's avatar
Valentin Reis committed
124

Valentin Reis's avatar
Valentin Reis committed
125
    dhrun = haskellPackages.dhrun.overrideAttrs (old:{
Valentin Reis's avatar
Valentin Reis committed
126
        installPhase = old.installPhase + ''
Valentin Reis's avatar
Valentin Reis committed
127 128
          mkdir -p $out/share/
          cp -r resources $out/share/
Valentin Reis's avatar
Valentin Reis committed
129
        '';
Valentin Reis's avatar
Valentin Reis committed
130 131 132 133
      });

    argonix = haskellPackages.argonix.overrideAttrs (old:{
        installPhase = old.installPhase + ''
Valentin Reis's avatar
Valentin Reis committed
134
          mkdir -p $out/share/
Valentin Reis's avatar
Valentin Reis committed
135 136 137
          $out/bin/argonix --bash-completion-script argonix > $out/share/argonix.sh
        '';
      });
138

Valentin Reis's avatar
Valentin Reis committed
139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
    powerplots =
    let
      pkl = with pkgs.rPackages; [ docopt pracma tidyr readr magrittr formatR
          purrr wrapr knitr cowplot plotly lubridate dplyr ggplot2 fpp2
          prospectr gridExtra zoo xtable ggthemes data_table
        ];
      myR = (pkgs.rWrapper.override{ packages = [pkl];});
    in
    haskellPackages.powerplots.overrideDerivation (drv: rec {
      buildInputs = (drv.buildInputs or []) ++ [
        pkgs.makeWrapper
        myR
      ];

      installPhase = drv.installPhase + ''
        wrapProgram "$out/bin/powerplots" \
          --set R_LIBS_SITE `Rscript -e "Sys.getenv(\"R_LIBS_SITE\")"`
      '';

    });

160
    # fix for nrm
Valentin Reis's avatar
Valentin Reis committed
161
    pyzmq = pkgs.pythonPackages.pyzmq.override { zeromq3 = pkgs.zeromq; };
Valentin Reis's avatar
Valentin Reis committed
162

Valentin Reis's avatar
Valentin Reis committed
163 164 165 166 167 168 169
    hwloc2 = pkgs.hwloc.overrideAttrs (old:{
      src = pkgs.fetchurl {
        url = "https://download.open-mpi.org/release/hwloc/v2.0/hwloc-2.0.3.tar.gz";
        sha256 = "0707ml34ylrr8zwwhddp64q6q57248m9646f27jadcx5m93g5pk4";
      };
    });

170
    # archived for sake of the simplicity of this file
Valentin Reis's avatar
Valentin Reis committed
171 172
    zmcat = pkgs-old.haskellPackages.callPackage ./zmcat {};
    zmqat = pkgs-old.haskellPackages.zmqat;
173

174
    # ci/experimental environments
Valentin Reis's avatar
Valentin Reis committed
175 176
    test = pkgs.stdenv.mkDerivation rec {
      name = "testEnv";
177

Valentin Reis's avatar
Valentin Reis committed
178
      buildInputs = [
Valentin Reis's avatar
Valentin Reis committed
179
        # tooling may run mpiexec or hwloc:
Valentin Reis's avatar
Valentin Reis committed
180 181 182 183 184 185 186
        pkgs.mpich2
        pkgs.hwloc
        # these are needed for some reason:
        pkgs.coreutils
        pkgs.utillinux
        pkgs.git
        # argo tools
Valentin Reis's avatar
Valentin Reis committed
187
        dhrun
Valentin Reis's avatar
Valentin Reis committed
188 189 190
        # argo components
        containers
        nrm
Valentin Reis's avatar
Valentin Reis committed
191
      ];
192

Valentin Reis's avatar
Valentin Reis committed
193
      #required to be able to build the drv.
194
      installPhase = "mkdir $out";
Valentin Reis's avatar
Valentin Reis committed
195
      unpackPhase = "true";
Valentin Reis's avatar
Valentin Reis committed
196

197 198 199 200 201 202 203 204
      __noChroot = true;
      shellHook =''
        echo ""
        echo "ENTERING ENVIRONMENT: Sources of impurity for this build are: /tmp/ /etc/argo/ /var/run/ /var/lock/".
        echo "ENTERING ENVIRONMENT: Moreover, sandboxing is disabled, in particular because of:"
        echo "ENTERING ENVIRONMENT: /tmp/nrm-* sockets, /etc/argo, /var/run/, /var/lock/ which all need read access. "
        echo "ENTERING ENVIRONMENT: until these components are patched to allow for alternative paths, no sandbox use is possible."
        echo ""
205
      '';
206
      #argotk uses this environment variable.
Valentin Reis's avatar
Valentin Reis committed
207
      #OPENMC_PWD = "${argotk}/share/openmc";
Valentin Reis's avatar
Valentin Reis committed
208
    };
Valentin Reis's avatar
Valentin Reis committed
209

Valentin Reis's avatar
Valentin Reis committed
210
    testApplications = test.overrideAttrs (old:{
Valentin Reis's avatar
Valentin Reis committed
211
      name = "testEnv-with-applications";
212
      buildInputs = old.buildInputs ++ [
Valentin Reis's avatar
Valentin Reis committed
213
        lammps
214
        qmcpack
Valentin Reis's avatar
Valentin Reis committed
215 216 217 218 219 220
        openmc
        stream
        amg
        openmc-data
      ];
    });
Valentin Reis's avatar
Valentin Reis committed
221

222
    powerexpe = testApplications.overrideAttrs (old:{
Valentin Reis's avatar
Valentin Reis committed
223 224
      name = "power-experiments";
      buildInputs = old.buildInputs ++ [
225 226
        #debug tools
        pkgs.which
Valentin Reis's avatar
Valentin Reis committed
227
        zmcat
228 229
        #experiment tools
        zymake
230
      ];
Valentin Reis's avatar
Valentin Reis committed
231
      buildPhase = "zymake ${experiments-src}/experiments/zymakefile";
Valentin Reis's avatar
Valentin Reis committed
232 233 234 235
      installPhase = ''
        mkdir -p $out
        cp -r o/* $out
      '';
Valentin Reis's avatar
Valentin Reis committed
236
    });
Valentin Reis's avatar
Valentin Reis committed
237

Valentin Reis's avatar
Valentin Reis committed
238 239 240 241 242
    analysis = pkgs.stdenv.mkDerivation rec {
      name = "analysis";
      src = experiments-src;

      #required to be able to build the drv.
Valentin Reis's avatar
Valentin Reis committed
243 244 245
      installPhase = ''
        mkdir -p $out
      '';
Valentin Reis's avatar
Valentin Reis committed
246 247 248
      unpackPhase = "true";

      buildInputs = [
249
        pkgs.pandoc
Valentin Reis's avatar
Valentin Reis committed
250 251 252 253
        (pkgs.rWrapper.override{ packages = with pkgs.rPackages; [
          pkgs.rlwrap
          pkgs.pandoc
          docopt
254 255 256 257
          pracma
          tidyr
          readr
          magrittr
Valentin Reis's avatar
Valentin Reis committed
258 259
          formatR
          purrr
260
          wrapr
Valentin Reis's avatar
Valentin Reis committed
261 262 263 264 265 266
          knitr
          cowplot
          plotly
          lubridate
          dplyr
          ggplot2
267 268 269 270
          fpp2
          prospectr
          gridExtra
          zoo
Valentin Reis's avatar
Valentin Reis committed
271 272 273 274 275 276 277
          xtable
          ggthemes
          data_table
        ];})
      ];
    };

278 279
    hanalysis = analysis.overrideAttrs (old:{
      buildInputs = old.buildInputs ++ [
Valentin Reis's avatar
Valentin Reis committed
280 281 282 283 284
        (haskellPackages.ghcWithPackages(p:[
          p.protolude
          p.optparse-applicative
          (p.inline-r.overrideAttrs(old:{doCheck=false;}))
        ]))
285 286 287
      ];
    });

Valentin Reis's avatar
Valentin Reis committed
288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334
    f = { mkDerivation, base, protolude, data-default
    , optparse-applicative, typed-process, inline-r
    , R, stdenv }:
    mkDerivation {
      pname = "hsr";
      version = "1.0.0";
      src = "";
      isLibrary = true;
      isExecutable = false;
      libraryHaskellDepends = [
        base
        protolude
        inline-r
        typed-process
        optparse-applicative
        data-default
      ];
      librarySystemDepends = [
        pkgs.pandoc
        R
        pkgs.rPackages.docopt
        pkgs.rPackages.pracma
        pkgs.rPackages.tidyr
        pkgs.rPackages.readr
        pkgs.rPackages.magrittr
        pkgs.rPackages.formatR
        pkgs.rPackages.purrr
        pkgs.rPackages.wrapr
        pkgs.rPackages.knitr
        pkgs.rPackages.cowplot
        pkgs.rPackages.plotly
        pkgs.rPackages.lubridate
        pkgs.rPackages.dplyr
        pkgs.rPackages.ggplot2
        pkgs.rPackages.fpp2
        pkgs.rPackages.prospectr
        pkgs.rPackages.gridExtra
        pkgs.rPackages.zoo
        pkgs.rPackages.xtable
        pkgs.rPackages.ggthemes
        pkgs.rPackages.data_table
      ];
      license = stdenv.lib.licenses.bsd3;
    };
    hanal = argolib.getHackEnv (pkgs//argopkgs)
      haskellPackages (haskellPackages.callPackage f {});

Valentin Reis's avatar
Valentin Reis committed
335 336
    report = analysis.overrideAttrs (old:{
      buildPhase = ''
337 338
        echo "analysis/zymakefolder.R ${powerexpe}"
        analysis/zymakefolder.R ${powerexpe}
Valentin Reis's avatar
Valentin Reis committed
339 340 341 342 343 344
      '';
      installPhase = ''
        mkdir -p $out
        cp -r index* $out
      '';
    });
345

Valentin Reis's avatar
Valentin Reis committed
346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370
    dhrunSpecs = pkgs.stdenv.mkDerivation rec {
      name = "dhrunSpecs";
      src = ../dhrun ;
      installPhase = ''
        mkdir -p $out
        cp -r $src/* $out
        substituteInPlace $out/assets/simple-H2O.xml --replace \
          H2O.HF.wfs.xml $out/assets/H2O.HF.wfs.xml
        substituteInPlace $out/assets/simple-H2O.xml --replace \
          O.BFD.xml $out/assets/O.BFD.xml
        substituteInPlace $out/assets/simple-H2O.xml --replace \
          H.BFD.xml $out/assets/H.BFD.xml
        substituteInPlace $out/lib.dh --replace \
          "dataDir = \"./\"" "dataDir = \"$out/\""
        substituteInPlace $out/lib.dh --replace \
          "https://xgitlab.cels.anl.gov/argo/dhrun/raw/master/" "${dhrun}/share/"
        '';
      unpackPhase = "true";
    };

    doDhrun = drv: command: drv.overrideAttrs (old:{
      buildPhase = ''
        dhrun run $DHRUNSPECS/tests/${command}.dh
      '';
      DHRUNSPECS = "${dhrunSpecs}";
Valentin Reis's avatar
Valentin Reis committed
371
      installPhase = ''
Valentin Reis's avatar
Valentin Reis committed
372
        mkdir -p $out
Valentin Reis's avatar
Valentin Reis committed
373 374 375 376
        cp _output/* $out/
      '';
    });

Valentin Reis's avatar
Valentin Reis committed
377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394
    testHello       = doDhrun test "hello";
    testListen      = doDhrun test "listen";
    testPerfwrapper = doDhrun test "performance";
    testPower       = doDhrun test "power";
    testSTREAM      = doDhrun (test.overrideAttrs
      (old:{buildInputs=old.buildInputs++[ stream  ];})) "stream";
    testAMG         = doDhrun (test.overrideAttrs
      (old:{buildInputs=old.buildInputs++[ amg     ];})) "amg";
    testOpenMC      = doDhrun (test.overrideAttrs
    (old:{buildInputs=old.buildInputs++[ openmc  ];
           OPENMC_CROSS_SECTIONS = "${openmc-data}/cross_sections.xml";
         })) "openmc";
    testLAMMPS      = doDhrun (test.overrideAttrs
      (old:{buildInputs=old.buildInputs++[ lammps  ];})) "lammps";
    testQMCPack     = doDhrun (test.overrideAttrs
      (old:{buildInputs=old.buildInputs++[ qmcpack ];})) "qmcpack";
    testAll         = doDhrun (test.overrideAttrs
      (old:{OPENMC_CROSS_SECTIONS = "${openmc-data}/cross_sections.xml";})) "tests";
395
  };
396
# re-exporting a full nixpkgs-like package set
397
in pkgs // argopkgs